PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0158s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 274aa MW: 30479.8 Da PI: 8.4578 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.2e-37 | 54 | 114 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynny+ +qPry+CkaCrryWt+GG+lrnvPvGg++rk++k s Kalax.0158s0003.1.p 54 KDQALNCPRCNSTNTKFCYYNNYNPTQPRYLCKACRRYWTHGGTLRNVPVGGSSRKKNKPS 114 6899****************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-24 | 52 | 112 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-32 | 55 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.997 | 58 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 60 | 96 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDAAQRPTVL VYDFHKATGL VSPTEESCAI AASNSSPPSH SELDKNKKTR PPNKDQALNC 60 PRCNSTNTKF CYYNNYNPTQ PRYLCKACRR YWTHGGTLRN VPVGGSSRKK NKPSSLIPSQ 120 SNNNNNFFVD LNPKPTTMLA NFSAPISPTR SLMHESQDLS MGLYYRANAH HFLPIPPTCF 180 ELSTSQGAFS PSSGFHFQDD IMKPTLNLYM NGGSEHDRSN TEGDERIPYG LGDQLKQVYS 240 ASSNASTVWD QTSGATRDFN NGVLYWNTHE LYM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-33 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0158s0003.1.p |