PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0157s0017.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 843aa MW: 95872.8 Da PI: 9.2771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.1e-07 | 196 | 239 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT Ed+ l+ vk+ + +W Ia +g++Rt+ qc r+q Kalax.0157s0017.3.p 196 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 239 9***************************************9995 PP | |||||||
2 | Myb_DNA-binding | 34.8 | 3.9e-11 | 248 | 291 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W +eEd +l av+ +G +W +a+ + +Rt+ qc +rw k Kalax.0157s0017.3.p 248 REWEEEEDFRLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 291 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 43.7 | 6.5e-14 | 301 | 345 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT +Ed++ + vk++G ++W++Ia+ ++ gRt qc++rw + Kalax.0157s0017.3.p 301 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 345 8******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 42.6 | 1.4e-13 | 354 | 395 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++Ed++l a++++ W+++a++++ Rt++qc+ rw Kalax.0157s0017.3.p 354 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 395 8*****************99.*********.9**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.448 | 92 | 188 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.21 | 93 | 190 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 96 | 112 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 161 | 199 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.88E-14 | 171 | 242 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.362 | 189 | 241 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-4 | 193 | 243 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.0E-10 | 197 | 258 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 200 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.66E-17 | 226 | 295 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.185 | 242 | 293 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-10 | 246 | 295 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-8 | 249 | 293 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 250 | 296 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.779 | 294 | 350 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-26 | 297 | 393 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-10 | 299 | 348 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 301 | 351 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-12 | 301 | 345 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 302 | 344 | No hit | No description |
SMART | SM00717 | 8.0E-10 | 351 | 399 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-16 | 352 | 396 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.036 | 353 | 401 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-11 | 354 | 394 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.28E-10 | 354 | 396 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MNPHCFQSRV QIEARIEESK KLKDRVKILK DFQVSTRKRV GLVLSQKKDQ RVQLISAPKR 60 GEKKASAMKF GPEDNRDVAF YKDAITKFPL ALQRQRWTNE ERDNLRKGIK QEFQKALLEK 120 SVDLISYSEG SYGISSDIDN VMASIKGLEI TPENIRAYLP KVNWDNFASI YHQGRSGAEC 180 EARWLNWEDP LRNNTRWTRT EDKELLLIVK EKEMSNWIDI AVSLGTNRTP FQCLARFQRS 240 LNAQMVKREW EEEEDFRLCA AVRVFGESNW QMVASVLDKR TGTQCSNRWK KSLNPARVRV 300 GRWTIDEDKR MKVSVKLFGA KCWSKIAQFV PGRTQVQCRE RWVNCLDPSL NWDPWTEDED 360 LKLMTAITEY NYCWSKVAAC IPPRTDNQCR RRWMVLCPDD VYRLQAAKKI QQVALISNFV 420 DRETERPDLG PEDFVPPLIL CPASEPNSEE PTNKRKRKRR EKRASPMNNA GHNMSCSDSQ 480 KKKRCPRRRK EAQVDNEATL GAVDVNEANE VVSCLDEYVG TVENSTIVHP GSFECNEQGK 540 ADSSLYLELE PTDTGDEGQC GRSNSLKRKK YKPRRKARAE NVPVQSKAFL PAAQSESMLM 600 NHSFSHEIPV ENNTTSTQKR RTTIKHNKKK SCSIYKKNDY AFTAGTLSLQ MQTPDKSASI 660 PGAIAATSKS CKRERVKASS SLKDAVSFHR PSSCSCCLES IVCHQGAVNG TRVNGEVFAG 720 TAAAGLEEND FIPLASLGKR EKNFSQNEAE YAQEANSRSE MNNKFCCEQP ATSLGEDDSV 780 ALTSFIKRKR NVCNARIENE HNVDKGRKME IISVEQVGAG LNEDDIPLAL FIKKVKRVKE 840 KN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-28 | 195 | 393 | 2 | 151 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-28 | 195 | 393 | 2 | 151 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 453 | 459 | KRKRKRR |
2 | 454 | 459 | RKRKRR |
3 | 454 | 462 | RKRKRREKR |
4 | 456 | 461 | RKRREK |
5 | 485 | 489 | PRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278062.2 | 0.0 | PREDICTED: snRNA-activating protein complex subunit 4 isoform X2 | ||||
TrEMBL | A0A2N9GBE5 | 0.0 | A0A2N9GBE5_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_000461m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_010243797.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-147 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0157s0017.3.p |