PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0157s0017.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 840aa MW: 95696.1 Da PI: 9.7892 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.1e-07 | 226 | 269 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT Ed+ l+ vk+ + +W Ia +g++Rt+ qc r+q Kalax.0157s0017.2.p 226 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 269 9***************************************9995 PP | |||||||
2 | Myb_DNA-binding | 34.8 | 3.9e-11 | 278 | 321 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W +eEd +l av+ +G +W +a+ + +Rt+ qc +rw k Kalax.0157s0017.2.p 278 REWEEEEDFRLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 321 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 43.7 | 6.5e-14 | 331 | 375 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT +Ed++ + vk++G ++W++Ia+ ++ gRt qc++rw + Kalax.0157s0017.2.p 331 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 375 8******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 42.7 | 1.3e-13 | 384 | 425 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++Ed++l a++++ W+++a++++ Rt++qc+ rw Kalax.0157s0017.2.p 384 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 425 8*****************99.*********.9**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.448 | 122 | 218 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.21 | 123 | 220 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 126 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 191 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.88E-14 | 201 | 272 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.362 | 219 | 271 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-4 | 223 | 273 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.0E-10 | 227 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 230 | 279 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.66E-17 | 256 | 325 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.185 | 272 | 323 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-10 | 276 | 325 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-8 | 279 | 323 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 280 | 326 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.779 | 324 | 380 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-26 | 327 | 423 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-10 | 329 | 378 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 331 | 375 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 331 | 381 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-9 | 332 | 374 | No hit | No description |
SMART | SM00717 | 8.0E-10 | 381 | 429 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-16 | 382 | 426 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.036 | 383 | 431 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-11 | 384 | 424 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.95E-10 | 384 | 426 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MHEPTLLPVK GSGFPRPAQL LLDSIKKNRL CQKLIHNRLI QIEARIEESK KLKDRVKILK 60 DFQVSTRKRV GLVLSQKKDQ RVQLISAPKR GEKKASAMKF GPEDNRDVAF YKDAITKFPL 120 ALQRQRWTNE ERDNLRKGIK QEFQKALLEK SVDLISYSEG SYGISSDIDN VMASIKGLEI 180 TPENIRAYLP KVNWDNFASI YHQGRSGAEC EARWLNWEDP LRNNTRWTRT EDKELLLIVK 240 EKEMSNWIDI AVSLGTNRTP FQCLARFQRS LNAQMVKREW EEEEDFRLCA AVRVFGESNW 300 QMVASVLDKR TGTQCSNRWK KSLNPARVRV GRWTIDEDKR MKVSVKLFGA KCWSKIAQFV 360 PGRTQVQCRE RWVNCLDPSL NWDPWTEDED LKLMTAITEY NYCWSKVAAC IPPRTDNQCR 420 RRWMVLCPDD VYRLQAAKKI QQVALISNFV DRETERPDLG PEDFVPPLIL CPASEPNSEE 480 PTNKRKRKRR EKRASPMNNA GHNMSCSDSQ KKKRCPRRRK EAQVDNEATL GAVDVNEANE 540 VVSCLDEYVD TGDEGQCGRS NSLKRKKYKP RRKARAENVP VQSKAFLPAA QSESMLMNHS 600 FSHEIPVENN TTSTQKRRTT IKHNKKKSCS IYKKNDYAFT AGTLSLQMQT PDKSASIPGA 660 IAATSKSCKR ERVKASSSLK DAVSFHRPSS CSCCLESIVC HQGAVNGTRV NGEVFAGTAA 720 AGLEENDFIP LASLGKREKN FSQNEAEYAQ EANSRSEMNN KFCCEQPATS LGEDDSVALT 780 SFIKRKRNVC NARIENEHNV DKGRKMEIIS VEQVGAGLNE DDIPLALFIK KVKRVKEKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-28 | 225 | 423 | 2 | 151 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-28 | 225 | 423 | 2 | 151 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 483 | 489 | KRKRKRR |
2 | 484 | 489 | RKRKRR |
3 | 484 | 492 | RKRKRREKR |
4 | 486 | 491 | RKRREK |
5 | 515 | 519 | PRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123428.1 | 0.0 | snRNA-activating protein complex subunit 4 homolog, partial | ||||
Refseq | XP_027123429.1 | 0.0 | snRNA-activating protein complex subunit 4 homolog, partial | ||||
TrEMBL | A0A068TQ56 | 0.0 | A0A068TQ56_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A2G9HYB1 | 0.0 | A0A2G9HYB1_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_000461m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_010243797.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-157 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0157s0017.2.p |