PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0155s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 307aa MW: 33175 Da PI: 7.0126 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.3e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC ++ lC +C H+ H+ Kalax.0155s0026.1.p 4 QCDVCSSSEASVFCSADEAALCSSCDHRVHHAnklaskHQ 43 7******99******************9964446666676 PP | |||||||
2 | zf-B_box | 30.8 | 6e-10 | 56 | 93 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ lfC++++ lC+dC +++H+ Ht Kalax.0155s0026.1.p 56 VPVCDICQEKRAFLFCQQDRAVLCKDCDFSIHSAneHT 93 689*****************************657765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.993 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.62E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.9E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.452 | 54 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.3E-16 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.3E-8 | 56 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-10 | 57 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MKIQCDVCSS SEASVFCSAD EAALCSSCDH RVHHANKLAS KHQRFSLVMN PDKKDVPVCD 60 ICQEKRAFLF CQQDRAVLCK DCDFSIHSAN EHTQKHNRFL LTGVRLSAYV LSSAAAKTTA 120 SETSLTGSCD LVPEFKSQPL IKKSNSVSNP TLNPQSLAVE RIASPSSSSG GGKSVALKND 180 VGISEYLIEM LPGWHVEDFL DSTSDPDGFS KGDDGMFAFN NGNFQTSNLS SSPSQNAAIW 240 VPQAPQPPSK QASHYAASHL SGNISFKEAT STKSNMQWAD EGFAVPQISP QSTNTSSKRS 300 RPLWYL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017685.2 | 1e-113 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-75 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A061FC44 | 1e-110 | A0A061FC44_THECC; Salt tolerance 2, putative isoform 1 | ||||
STRING | EOY14910 | 1e-111 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-68 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0155s0026.1.p |