PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0155s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SRS
Protein Properties Length: 355aa    MW: 38835.8 Da    PI: 8.0323
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0155s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702193.19.4e-601332853154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                           g+++CqdCGnqakkdC h RCRtCCksrg++C+th+kstWvpa+krrerqqqlaa++++++ + ++++   kr      +  l++t+  
  Kalax.0155s0023.1.p 133 GGGINCQDCGNQAKKDCPHLRCRTCCKSRGLQCQTHIKSTWVPASKRRERQQQLAALQQSQQLRLRSQDITLKRP-----RGELTTTN-- 215
                          5789****************************************************9877766554444333332.....23333333.. PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvd.....dg.....eeelaYqtavsigGhvfkGiLydqGlee 154
                           ++s   l  +++P+ev+s+a+frcvrvss+d     d+     e++laYqtavsigGhvfkGiLydqG+e+
  Kalax.0155s0023.1.p 216 -TTSGLDL-SNTFPNEVNSQAIFRCVRVSSMDpehnaDEehgrhEDQLAYQTAVSIGGHVFKGILYDQGPES 285
                          .3333333.345*******************8444331122333578***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-59135284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-26137179IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.6E-21226283IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MASFFSSLGG GGSGGVRDEQ DEEQDQQQPP PAAANSLFLY RSEEIYKQQQ GLEIWQQQQF  60
YRQQQQQQQQ YQPRDQHHHH HHIISYAPAA GPPPSLMAPS SSRRLSFNVS SDASSSRSGG  120
GGFTVMRGIG GSGGGINCQD CGNQAKKDCP HLRCRTCCKS RGLQCQTHIK STWVPASKRR  180
ERQQQLAALQ QSQQLRLRSQ DITLKRPRGE LTTTNTTSGL DLSNTFPNEV NSQAIFRCVR  240
VSSMDPEHNA DEEHGRHEDQ LAYQTAVSIG GHVFKGILYD QGPESRYGES SSVGSGAYQQ  300
QQQQLNLITS GATTTGAMTT SIAATQALLD ASLNYPTPIN AFMAGTQFFP PSRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028766548.11e-88protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A061DFV67e-85A0A061DFV6_THECC; Lateral root primordium protein-related, putative
STRINGEOX909421e-85(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-53Lateral root primordium (LRP) protein-related