PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0155s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 196aa    MW: 20982.3 Da    PI: 7.1319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0155s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-194998255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa+ kl+g
  Kalax.0155s0020.1.p 49 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDAAAIKLYG 98
                         69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-2148107No hitNo description
SuperFamilySSF541717.85E-2249107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3049107IPR001471AP2/ERF domain
PfamPF008471.6E-144998IPR001471AP2/ERF domain
SMARTSM003801.2E-3349112IPR001471AP2/ERF domain
PROSITE profilePS5103222.64249106IPR001471AP2/ERF domain
PRINTSPR003676.6E-105061IPR001471AP2/ERF domain
PRINTSPR003676.6E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSSYSSSST SSSSSEKLAR GSPGRKRGQG TSRKGCMRGK GGPENAACTY KGVRQRTWGK  60
WVAEIREPNR GARLWLGTFD TSREAALAYD AAAIKLYGSD AKLNLPDPIL NPTTNDYSTN  120
NASSNNYGLA TSSGKYDAVL DPEKMAKAED IVDEELWAEA AKTLEFPIME GPGIFGNQCV  180
DGNGLEVVMH SPWCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1850106663ATERF1
3gcc_A1e-1850106663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9414354e-32EU941435.1 Zea mays clone 1451684 mRNA sequence.
GenBankEU9764784e-32EU976478.1 Zea mays clone 895667 mRNA sequence.
GenBankKJ7276754e-32KJ727675.1 Zea mays clone pUT5602 AP2-EREBP transcription factor (EREB89) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686999.12e-58PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-46DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2N9IGX58e-59A0A2N9IGX5_FAGSY; Uncharacterized protein
STRINGGorai.009G271400.14e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]