PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0154s0058.7.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 166aa MW: 18178.6 Da PI: 9.7166

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0154s0058.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	185.9	2.1e-57	2	153	23	169
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesastsvssekl....sen 104 vsvP ts++++vtvrCGhC++llsvn+ q + +h+ ++ +++ l ++ +++ n++s ++++s+s+ ++ kl ++ Kalax.0154s0058.7.p 2 EVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQPSSI-QHFPQKQQQTgaegALMTNATNNLNYSSGSSSSSSPSKCNPD-KLsgscLSS 89 69*********************999887755444.444433333311123333333333333333333333333333.335554455 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 e+++ pr pp +rP ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg Kalax.0154s0058.7.p 90 ENNQPPRLPP-VRPMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFG 153 6677788888.9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.1E-58	2	154	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-7	99	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.8E-5	107	162	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEVSVPCTSM LNIVTVRCGH CANLLSVNMG ALLQPSSIQH FPQKQQQTGA EGALMTNATN 60 NLNYSSGSSS SSSPSKCNPD KLSGSCLSSE NNQPPRLPPV RPMEKRQRVP SAYNRFIKEE 120 IQRIKASNPE ISHREAFSAA AKNWAHFPHI HFGMKKAKFL DQDIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851072.1	3e-61	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-50	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A061GUT1	8e-57	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	Migut.D02379.1.p	1e-60	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0154s0058.7.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]