PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0154s0058.6.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 168aa MW: 18377.8 Da PI: 9.7166

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0154s0058.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	182.9	1.7e-56	2	155	23	169
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl........sen 104 vsvP ts++++vtvrCGhC++llsvn+ q ++ +h+ ++ +++ +e +++++ + ++ s+s+s +s+ ++ Kalax.0154s0058.6.p 2 EVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQP-SSIQHFPQQKQQQTGAEGALMTNATNNLNYSSGSSSSSSPSKCNpdklsgscLSS 90 69**********************99877654.4455556666555555544444444444444444444444433234446665456 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 e+++ pr ppv ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg Kalax.0154s0058.6.p 91 ENNQPPRLPPVRPAMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFG 155 777889999976667***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-57	2	156	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-7	103	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.0E-5	109	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MEVSVPCTSM LNIVTVRCGH CANLLSVNMG ALLQPSSIQH FPQQKQQQTG AEGALMTNAT 60 NNLNYSSGSS SSSSPSKCNP DKLSGSCLSS ENNQPPRLPP VRPAMEKRQR VPSAYNRFIK 120 EEIQRIKASN PEISHREAFS AAAKNWAHFP HIHFGMKKAK FLDQDIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651636.1	1e-59	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-49	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D7T1M7	5e-56	D7T1M7_VITVI; Uncharacterized protein
STRING	Migut.D02379.1.p	5e-59	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-50	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0154s0058.6.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]