PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0153s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 126aa MW: 14281.8 Da PI: 5.7313 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 19 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd ++ +r++lg+fgtaeeAa+a+++a+ +++g+ Kalax.0153s0033.1.p 19 KYRGVRCRP-WGKYAAEIRD----SaRHgARVWLGTFGTAEEAARAYDKAAYSMRGH 70 8*****999.**********....33236**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.708 | 19 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-15 | 19 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 19 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.64E-27 | 19 | 78 | No hit | No description |
SMART | SM00380 | 1.1E-31 | 19 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 19 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
MAGKEEQCDR NVSGESVVKY RGVRCRPWGK YAAEIRDSAR HGARVWLGTF GTAEEAARAY 60 DKAAYSMRGH MAVLNFPEEY GLRPKKSHET SSASSSRKEV FEFECLDDEL LDEMLRDTND 120 QPQQW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-35 | 6 | 110 | 2 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827144.1 | 4e-40 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Refseq | XP_023733438.1 | 5e-40 | ethylene-responsive transcription factor ERF096-like | ||||
Refseq | XP_028959491.1 | 4e-40 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 4e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2G9I9T0 | 2e-45 | A0A2G9I9T0_9LAMI; Uncharacterized protein | ||||
STRING | OPUNC09G18680.1 | 4e-40 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23220.1 | 5e-26 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0153s0033.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|