PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0152s0067.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 274aa    MW: 30472.2 Da    PI: 7.9182
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0152s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.1e-331771155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rFvea+++LGG++kAtPk++++lmk++gLtl+h+kSHLQk+Rl
  Kalax.0152s0067.1.p 17 KPRLKWTPELHSRFVEAIAKLGGPDKATPKSVMKLMKIPGLTLYHLKSHLQKFRL 71
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4491474IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-301574IPR009057Homeodomain-like
SuperFamilySSF466892.15E-161672IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-231772IPR006447Myb domain, plants
PfamPF002491.8E-81969IPR001005SANT/Myb domain
PfamPF143791.3E-20110155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGLPDQNTSL ILSTDAKPRL KWTPELHSRF VEAIAKLGGP DKATPKSVMK LMKIPGLTLY  60
HLKSHLQKFR LGKSQLSETC PDSRPEDRGQ IHFDQDDHGA SLKQINENFK IAQALQLQME  120
VQTQLHTQIE VQRRLQLRIE AQGKYLQSVL KKAQESLAGY KNTSQCELSE LVSMVNSSCQ  180
NSSALSDLTE TESCRLRDLA KGLARCARSS DASPTSSSSP AQEQQDSLNH QLNTRKRNGS  240
TALDADDQQT AKRPRLSLQL SLDLNSEYED QSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-211773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-211773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-211773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-211773157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-211673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890537.11e-88myb family transcription factor PHL8-like isoform X3
SwissprotF4I2742e-62PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2I4DJV41e-82A0A2I4DJV4_JUGRE; myb family transcription factor PHL8-like
STRINGXP_010108678.11e-82(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-64G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]