PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0152s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37155.6 Da PI: 5.1569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 92 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +grWvAeI+d +++ + g+++taeeAa+a+++a+ l+g Kalax.0152s0048.1.p 92 RYIGVRKRP-SGRWVAEIKD------TRKLHTGTYDTAEEAARAYDEAAFMLRG 138 799******.7*********......8***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.80E-23 | 91 | 145 | No hit | No description |
Pfam | PF00847 | 1.8E-12 | 92 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.464 | 92 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-20 | 92 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-16 | 92 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-24 | 92 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MSKLLDNFAT AYQIPALMLI LFLIYPEKLK RDGDVLHKIK AKNPPFVAYT SKFYTQIWMG 60 MVKKKDSSVE EDENQGAPRS VALGGAGQVR KRYIGVRKRP SGRWVAEIKD TRKLHTGTYD 120 TAEEAARAYD EAAFMLRGSN TRRNFWPCAP DSPDCTSALS SRITGLLRAR LRVRNRSPGR 180 SSSGYIPSHQ QDNTVEVAES EPLGRFQETS QLSCHGTNWF ASFYDDPESG EASKAEEENL 240 VYTRFADFEF ADSMGSSSSV YCSPFELPEE ISEPLEPPPP ITNIMGPATT LSETINQMQY 300 ERNFSATLYA YNGVSDCLRL QETLTGLEED GS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-12 | 85 | 145 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098777.1 | 4e-52 | ethylene-responsive transcription factor 10-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-10 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0152s0048.1.p |