PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0150s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 399aa    MW: 44520.8 Da    PI: 6.1455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0150s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++ Ed++lv  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Kalax.0150s0024.1.p 16 KGPWSPKEDLRLVSFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                         79******************************99************97 PP
2Myb_DNA-binding49.21.3e-1569114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE+e ++++ +  G++ W++Ia++++ gRt++++k+ w+++l
  Kalax.0150s0024.1.p  69 RGNFTKEEEETIIRLQQSIGNK-WSRIAAHLP-GRTDNEIKNVWNTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9781163IPR017930Myb domain
SuperFamilySSF466896.36E-2913110IPR009057Homeodomain-like
SMARTSM007171.1E-111565IPR001005SANT/Myb domain
PfamPF002491.7E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-231770IPR009057Homeodomain-like
CDDcd001671.17E-91863No hitNo description
PROSITE profilePS5129425.09464118IPR017930Myb domain
SMARTSM007176.6E-1468116IPR001005SANT/Myb domain
PfamPF002492.8E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2771118IPR009057Homeodomain-like
CDDcd001672.71E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRGRAPCCD KSRVTKGPWS PKEDLRLVSF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTKEEEETI IRLQQSIGNK WSRIAAHLPG RTDNEIKNVW NTHLKKKLTS  120
RAAVSVPKED QVTKESPSSA IKFSSSSSAQ VESNPNNNQK NEKDSQINLL PLDGSPTILA  180
PNISTLANPV TELHDSESFN NFGNTSQHND HLFNSSGINQ LEQFTMWEDP NILESLLNTE  240
EDPNWVLAPQ NTQPDSTKDN FSGELSVVSE FDLWSTLKID GIPAPAKPDD KEGNKIHTVE  300
APMGMNTAHE YITDKDIDSM FRYLETEPRL PEISVEMIEK PKQYQGVNLS HIIPAAGTGS  360
AVNETPGVDY FPVASISHLS LSKVLPEDQP THLFGSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141182105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-25141186159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-25141186159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25141182105C-Myb DNA-Binding Domain
1msf_C1e-25141182105C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.16e-73myb domain protein 63