PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0150s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 437aa MW: 48355.6 Da PI: 9.0586 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.6 | 1.4e-33 | 87 | 141 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Kalax.0150s0013.1.p 87 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 141 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.801 | 84 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-32 | 84 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-16 | 86 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 87 | 142 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 89 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.6E-21 | 180 | 219 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MHTAFPPFPD SLPSSKTEPY SPPLYESHLF IFARRETKQQ AARNSAYSKK KKKMFHSKKP 60 SSMNNSPHER AMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVAQLGGP DKATPKTIMR 120 VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN EHSLKDVSAL ELQRSNTSSS GMMGRNMNEM 180 QLEVQRRLHE QLEVQRHLQL RIEAQGKYMQ AILEKACQTL AGENNHNMAS GSSSYNNMKA 240 GIGNNQGVGG QHHQDLDAIK DFASLGFPSL LDLSIYGQAA AGGDQIDLHQ SNFDSNDTDN 300 SRPPSMDVFI HDPNTNDDAI CLGNPKKRPS PYISSSGNGK GPLLWSDDLR LQDLGTATTQ 360 SCHDIQIGPP PSTSPAMEET LFETKPMSLN GDPMMGEKAI KLERPSPRRV PHVSSVDRMM 420 NPVMSMSQGR SSSPFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 87 | 143 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 87 | 143 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 87 | 143 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 87 | 143 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 87 | 143 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 58 | KKKKKMFHSKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024198168.1 | 1e-149 | myb family transcription factor APL isoform X1 | ||||
Swissprot | Q9SAK5 | 1e-118 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A1R3I5R9 | 1e-148 | A0A1R3I5R9_9ROSI; Uncharacterized protein | ||||
STRING | XP_008226001.1 | 1e-147 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-112 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0150s0013.1.p |
Publications ? help Back to Top | |||
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