PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0150s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 44087.3 Da PI: 4.7079 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.7 | 1.1e-08 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + ++++fC +++ +lC+ C ++ H+ H++v Kalax.0150s0004.1.p 16 ARACDGCMLRRARWFCASDDAFLCHACDVSVHSAnqlagrHQRV 59 578*****999*********************668888889877 PP | |||||||
2 | CCT | 66.4 | 8e-23 | 340 | 383 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Kalax.0150s0004.1.p 340 RVARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRV 383 89****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.6E-7 | 16 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.37E-11 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 3.5E-17 | 340 | 382 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.815 | 340 | 382 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLSECHTASA IGARTARACD GCMLRRARWF CASDDAFLCH ACDVSVHSAN QLAGRHQRVR 60 ISTASLGDGV ADWDRKVTRR ARTPRNGLKG KLELKEASSL IVPEIGVEEE QSSENEDLMV 120 FQVPVFEADC GFWNEDESTS AEELHRLLEF VPDDIQYTAG HEGLIGVDSS CDTELLDSKE 180 SKKMDVGFEN NERNYSRVKM EGGDDEIEAV LAFQFDSELM NSDSRESMLD WDFGFESDVM 240 MVKGEEDVKM IAEQSGGEEA VPFGKGMLLL KLNCEQVMSA WDDQGCPWMD GTPPEFDPIG 300 DGWPKFPGVR DANAGPGNTN PDDENGGSSA GGGRVVSEER VARVTRYREK RRTRLFSKKI 360 RYEVRKLNAE KRPRMKGRFV KRVQSYVGPQ IASLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 366 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027167869.1 | 2e-91 | zinc finger protein CONSTANS-LIKE 16-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-57 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0150s0004.1.p |