PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0148s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 273aa    MW: 30346 Da    PI: 7.4032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0148s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.3e-3262166199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k ltpsdv+k++rlv+pk++ae+h      +g   +++ l++ede gr W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++
  Kalax.0148s0040.1.p  62 FEKPLTPSDVGKLNRLVIPKQHAERHfplntsNGADSGGMLLSFEDEAGRFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFER 151
                          99***************************9995566799**************************************************8 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          + ++  +l+++++r+
  Kalax.0148s0040.1.p 152 HPTDPDRLFIGWRRR 166
                          87788889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-3955174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3061168IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-2861155No hitNo description
PfamPF023623.8E-2962166IPR003340B3 DNA binding domain
SMARTSM010194.8E-2362167IPR003340B3 DNA binding domain
PROSITE profilePS5086314.22662167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADSTNSSPN SKSLVFAHHF QSFNLNNPND SEDDDGRRAE QIINSNCGGS QQQHHQQLVV  60
MFEKPLTPSD VGKLNRLVIP KQHAERHFPL NTSNGADSGG MLLSFEDEAG RFWRFRYSYW  120
NSSQSYVLTK GWSRYVKEKR LDAGDVVLFE RHPTDPDRLF IGWRRRHDPA HQSNSNAAAA  180
SVAGRGLSYS AHSPAYPAHQ YRPDSEASAG GAGVSQSKTE SFNGSSSTRT LRLFGVNMEY  240
QCESDQSEPA SPDGSSMSSP SRQVAYQRYY TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-47611667113B3 domain-containing transcription factor NGA1
5os9_B4e-47611667113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080622.17e-73B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ26e-64Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A438EK281e-70A0A438EK28_VITVI; B3 domain-containing protein
TrEMBLF6HKN63e-71F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t015e-72(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-59B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]