PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0145s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32681.8 Da PI: 7.0876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl Kalax.0145s0012.1.p 17 KGAWSEEEDALLRECIDKYGEGKWHQVPLKAGLNRCRKSCRLRWLNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Kalax.0145s0012.1.p 70 RGEFSMDEADLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 115 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.594 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-22 | 15 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-10 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-23 | 68 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.763 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-9 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MPRMAADHGH RLYGVRKGAW SEEEDALLRE CIDKYGEGKW HQVPLKAGLN RCRKSCRLRW 60 LNYLKPNIKR GEFSMDEADL IIRLHKLLGN RWSLIAGRLP GRTANDVKNY WNTHLGKKTM 120 LRLQALMNSA AAADYQTKVI KPRPRTFSKT LVQCMRSGQQ QQQGQHFCTN NGSKSSTIKD 180 DAVDLISGKD DDGVDKQIQW WKSLLDDQLS DQELAALASG SCGLVEEEQA GYELPQPPVD 240 DRSGYKIYEE RPKTDFTNEL SFDIELWDFF TDDDQWQTSS GLIQGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 17 | 119 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 5e-76 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 1e-65 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3G8FWW7 | 4e-76 | A0A3G8FWW7_9SOLA; MYB transcription factor AN2 | ||||
STRING | XP_010062250.1 | 1e-74 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-67 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0145s0012.1.p |
Publications ? help Back to Top | |||
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