PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0144s0041.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 278aa    MW: 30775.9 Da    PI: 9.0683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0144s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056486123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C++ F r  nL+ H r+H
  Kalax.0144s0041.1.p 64 HICEICNQGFQRDQNLQMHRRRH 86
                         68********************9 PP
2zf-C2H216.23e-05141163123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k +  +s++k H++t+
  Kalax.0144s0041.1.p 141 WVCGRCSKAYAVQSDYKAHLKTC 163
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0766486IPR007087Zinc finger, C2H2
SMARTSM003550.0336486IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.1E-56486No hitNo description
Gene3DG3DSA:3.30.160.608.8E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035599105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4132162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-5136161No hitNo description
SMARTSM00355140141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLGKSRGAEN PFSSSLHEPT PCLENKDVSN STSSKRKRRP AGTPDPDAEV ISLSPKTLLE  60
SDQHICEICN QGFQRDQNLQ MHRRRHKVPW KLLKRENPGQ RKRVYVCPEP SCLHHNPSHA  120
LGDLVGIKKH FKRKHSNLKE WVCGRCSKAY AVQSDYKAHL KTCGTRGHSC DCGRIFSKVE  180
SFIEHQDTCQ VSCLMSDKHI PSTKQTILLS GTASSSGSAS VHIPDHGAAP WLQAGSITEI  240
GMIMKGNKDK IAADVIGNGE YHNLELQLST TSTWYGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-16139191557Zinc finger protein JACKDAW
5b3h_F2e-16139191557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926986.11e-113protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-104IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A371GAH61e-112A0A371GAH6_MUCPR; Protein SHOOT GRAVITROPISM 5
STRINGPOPTR_0012s03730.11e-111(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]