PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0143s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 37821.2 Da PI: 7.5287 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l++++ ++G+g +W + + + g++R++k+c++rw++yl Kalax.0143s0004.1.p 14 KGPWSPEEDLKLKEYIDKHGTGgNWISLPLKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.3 | 1.1e-10 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ Ed ++ + G++ W+ Ia+ ++ gRt++++k++w++ Kalax.0143s0004.1.p 69 GEFSDHEDRIICTLYYNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.73 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.96E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 14.354 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-9 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDLKLKEYID KHGTGGNWIS LPLKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDHEDRIIC TLYYNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVAA 120 NYVAPLPLSS LSSTPNSELM HHPHLQYLPS PTTAALCTSA CYFKDPSARL LLPAAAVGCF 180 TSSSSDNDLK YGSGDQMFHH HADNFVAGTV DLQNYPQLNN NKDYNNSFAM LGGTTDGSCT 240 SSDGSNSNIN TKYHISHELY QIGFHDHGGV RNKLVVQDDS NSYNNDCQHL GYYYDSIEEL 300 KQLISSSSSS TSATSNVNFD TCCLFDESKT RQAERVMHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304464.1 | 4e-86 | PREDICTED: transcription factor RAX2 | ||||
STRING | XP_004304464.1 | 2e-85 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-75 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0143s0004.1.p |