PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0142s0050.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 793aa    MW: 87631.8 Da    PI: 7.5182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0142s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17282381198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +g +W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kalax.0142s0050.2.p 282 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGSEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 370
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kalax.0142s0050.2.p 371 -PEGKLVMGFRK 381
                          .77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-29275383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-20279381IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-21280381No hitNo description
PROSITE profilePS5086310.926282383IPR003340B3 DNA binding domain
SMARTSM010196.5E-20282383IPR003340B3 DNA binding domain
PfamPF023624.0E-15282381IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35504554IPR011124Zinc finger, CW-type
PfamPF074962.6E-11509551IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MAARTCFNRS CTEVKSTRSS NGWRLSTGEY SILCDRCASL YEDGRFCEVF HSQAPGWVPC  60
QSCNKHIHCG CIVSSHTFML LDAGGIECIT CAKRSGRPIQ PGNLSYPPPP PLPHGVHRSP  120
FSERIRDLST KSWSQFSGVG PMQWREAPNL YNSFLAQSEA NTRVPCDIGI SNALIKNKSN  180
EDFSLSFLEK KIQRETDWSM RRIDRNSASG SLLRAAPSSE TPNSLHSIYS SEVDPSCKTP  240
TQNGRSHADG KSKNQLLIRY LPRTTDEELQ KIAGSSEIKP LFEKTLSASD AGRIGRLVVP  300
KKCAEAYFPH ISQPEGLPLK VQDVKGSEWV FQFRFWPNNN SRMYVLEGVT SYIQSMQLLA  360
GDKVTFSRLE PEGKLVMGFR KASKGSTDLG EHPNKISNNG DSNAGINLNL SNADKSGYIA  420
KDVTNVKSSV SRKRKNSSIF SKDRHLLLES MDLYELKITL EEAQRLIRPS PNHLSRVVIV  480
ENEIEEYEDC PVIGKPTVFT TDQMGKSIQW AQCEDCLKWR RLSADVLLPA KWTCSENYSD  540
LERSSCSSPQ DISAEHLADL LFSKNQSASK KIKVTHQEVD TIEAVEGLDA LANLAILGEG  600
QAVTTKHPRH RIGCSCIVCI QPPSGKGRKH KHTCDCTVCL TVKRRFQTLM LRREKKQQEK  660
DAEAASEKLQ RCSSLLEKSL ENDPLTYDNS SASTPTLKEV TGDGSVDISC GNKSSASPLK  720
DQIDLNIKPE RDDPVLSSEL DTLRLSYNAA EALDQMNSSI HGAVVEVAGN PTQTVEVAET  780
TVDGTDITSV TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-572623831124B3 domain-containing transcription repressor VAL1
5yzz_C4e-572623831124B3 domain-containing transcription repressor VAL1
5z00_C4e-572623831124B3 domain-containing transcription repressor VAL1
5z00_G4e-572623831124B3 domain-containing transcription repressor VAL1
5z00_K4e-572623831124B3 domain-containing transcription repressor VAL1
5z00_M4e-572623831124B3 domain-containing transcription repressor VAL1
6j9a_A5e-572623832125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467887.10.0B3 domain-containing protein Os07g0563300 isoform X1
TrEMBLV4U9070.0V4U907_9ROSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-161HSI2-like 1