PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0142s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 793aa MW: 87631.8 Da PI: 7.5182 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 282 | 381 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlv+pkk+ae++ ++++e+ l+++d +g +W +++++ +++s++yvl+ G ++ ++ +L +gD v+F++ + Kalax.0142s0050.1.p 282 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGSEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 370 99**************************556667778***************9989999999***9.********************766 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++lv+++++ Kalax.0142s0050.1.p 371 -PEGKLVMGFRK 381 .77777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-29 | 275 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.94E-20 | 279 | 381 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.27E-21 | 280 | 381 | No hit | No description |
PROSITE profile | PS50863 | 10.926 | 282 | 383 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-20 | 282 | 383 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-15 | 282 | 381 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.35 | 504 | 554 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.6E-11 | 509 | 551 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MAARTCFNRS CTEVKSTRSS NGWRLSTGEY SILCDRCASL YEDGRFCEVF HSQAPGWVPC 60 QSCNKHIHCG CIVSSHTFML LDAGGIECIT CAKRSGRPIQ PGNLSYPPPP PLPHGVHRSP 120 FSERIRDLST KSWSQFSGVG PMQWREAPNL YNSFLAQSEA NTRVPCDIGI SNALIKNKSN 180 EDFSLSFLEK KIQRETDWSM RRIDRNSASG SLLRAAPSSE TPNSLHSIYS SEVDPSCKTP 240 TQNGRSHADG KSKNQLLIRY LPRTTDEELQ KIAGSSEIKP LFEKTLSASD AGRIGRLVVP 300 KKCAEAYFPH ISQPEGLPLK VQDVKGSEWV FQFRFWPNNN SRMYVLEGVT SYIQSMQLLA 360 GDKVTFSRLE PEGKLVMGFR KASKGSTDLG EHPNKISNNG DSNAGINLNL SNADKSGYIA 420 KDVTNVKSSV SRKRKNSSIF SKDRHLLLES MDLYELKITL EEAQRLIRPS PNHLSRVVIV 480 ENEIEEYEDC PVIGKPTVFT TDQMGKSIQW AQCEDCLKWR RLSADVLLPA KWTCSENYSD 540 LERSSCSSPQ DISAEHLADL LFSKNQSASK KIKVTHQEVD TIEAVEGLDA LANLAILGEG 600 QAVTTKHPRH RIGCSCIVCI QPPSGKGRKH KHTCDCTVCL TVKRRFQTLM LRREKKQQEK 660 DAEAASEKLQ RCSSLLEKSL ENDPLTYDNS SASTPTLKEV TGDGSVDISC GNKSSASPLK 720 DQIDLNIKPE RDDPVLSSEL DTLRLSYNAA EALDQMNSSI HGAVVEVAGN PTQTVEVAET 780 TVDGTDITSV TS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 4e-57 | 262 | 383 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 5e-57 | 262 | 383 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467887.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X1 | ||||
TrEMBL | V4U907 | 0.0 | V4U907_9ROSI; Uncharacterized protein | ||||
STRING | XP_006467887.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-161 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0142s0050.1.p |