PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0141s0049.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 429aa MW: 46725.4 Da PI: 6.5123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0141s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.4e-08	382	403	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ff t Ck+G++C+F H+ Kalax.0141s0049.1.p 382 PCMFFNTTRGCKHGANCSFQHD 403 8********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.371	377	405	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-6	381	403	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	381	404	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-5	382	409	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MRGSKTRRVS WAADANLCQV RLFLNDEAPS QVGLGLQDHL QAKTSLHLHV TASEDNLPPG 60 FEGVQPLSNN SVLEVPTIRW KRPPKLTVDL TWLVAAGEES QEIEAENRRG LRVLEAIYPR 120 PSSIPPNAVI SVDVMESQND HQPPPLIPIT PIEEEGNVDD SPYEYDPMPA KQIGSQGQVA 180 VSGGFSTPVY VGNNSASTYS SDRLASVAAL GVEPGLLAAA SAACTAIMKT DEQGNPIDSE 240 LLVQILSDHN LVQKLVNGYG ANNLQSPPQN FPPVNLANPP SVQNSQPELS KPAVPLSSSN 300 GPFYSQPNKM LYSTVQAPPS LPTPPSKDLN YYKSLIKQHG EGRQEVAQQF GPRPNSQYGM 360 NQDHQRNNPH YRDSSKPKIL KPCMFFNTTR GCKHGANCSF QHDTSYQQRA SSIPDAKRMK 420 MDREIPGV*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MRGSKTRRVS WAADANLCQV RLFLNDEAPS QVGLGLQDHL QAKTSLHLHV TASEDNLPPG  60
FEGVQPLSNN SVLEVPTIRW KRPPKLTVDL TWLVAAGEES QEIEAENRRG LRVLEAIYPR  120
PSSIPPNAVI SVDVMESQND HQPPPLIPIT PIEEEGNVDD SPYEYDPMPA KQIGSQGQVA  180
VSGGFSTPVY VGNNSASTYS SDRLASVAAL GVEPGLLAAA SAACTAIMKT DEQGNPIDSE  240
LLVQILSDHN LVQKLVNGYG ANNLQSPPQN FPPVNLANPP SVQNSQPELS KPAVPLSSSN  300
GPFYSQPNKM LYSTVQAPPS LPTPPSKDLN YYKSLIKQHG EGRQEVAQQF GPRPNSQYGM  360
NQDHQRNNPH YRDSSKPKIL KPCMFFNTTR GCKHGANCSF QHDTSYQQRA SSIPDAKRMK  420
MDREIPGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435141.1	1e-124	zinc finger CCCH domain-containing protein 6
TrEMBL	V4TFC9	1e-122	V4TFC9_9ROSI; Uncharacterized protein
STRING	XP_006473619.1	1e-122	(Citrus sinensis)

Link Out ? help Back to Top
Phytozome	Kalax.0141s0049.1.p