PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0141s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 266aa    MW: 29726.7 Da    PI: 9.2101
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0141s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.31.2e-3647106261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+++cprC s++tkfCy+nny+++qPryfC++C+ yWt GG++rn+PvG+grrk+k+s
  Kalax.0141s0036.1.p  47 PDKMIPCPRCASMDTKFCYFNNYNVNQPRYFCRKCQMYWTSGGTMRNLPVGAGRRKSKSS 106
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2735104IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3049105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.74851105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
DNIGDGGLRD EKGKTVTHKP DQQDARAGTN EEQKSDAARQ DKTLKKPDKM IPCPRCASMD  60
TKFCYFNNYN VNQPRYFCRK CQMYWTSGGT MRNLPVGAGR RKSKSSAPQH QQMEVPFQPH  120
MMLFPAPLWP PFPWNPAQYN YPLPSPINYR AGFPGPFYPM YTGCAAPRSW NAPLSVHPPP  180
PSLESEPKSP TLGKHLRDDI DNAARPGNID TGEWQIEENL KPPIWVAKTV RIDNPAEAAK  240
NSMRATPGIK NDCPTVKDTS TCSPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582505.11e-57cyclic dof factor 2 isoform X3
SwissprotQ93ZL59e-50CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A1U8HWH46e-48A0A1U8HWH4_GOSHI; cyclic dof factor 1-like
STRINGAT5G39660.14e-48(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-38cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]