PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0140s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 247aa    MW: 26092.5 Da    PI: 5.1994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0140s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19107157255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp     k +r++lg+++t  eAa+a++aa+ k++g
  Kalax.0140s0078.1.p 107 KYRGVRRRP-WGKYAAEIRDP---ArKGARVWLGTYDTSIEAARAYDAAAFKMRG 157
                          8********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-36107171IPR001471AP2/ERF domain
PROSITE profilePS5103224.79107165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31107166IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23107167IPR016177DNA-binding domain
PfamPF008475.0E-15107157IPR001471AP2/ERF domain
CDDcd000185.42E-20107165No hitNo description
PRINTSPR003675.0E-13108119IPR001471AP2/ERF domain
PRINTSPR003675.0E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MNTLMASVEE ASFLDSIQQF LLTDDFVSES SSVSLQTLLS DSALSSSVGS SGSSCFGAVK  60
TEAEVSGESG VSTGGGGGLP PKPSRLSSRK PAALKVSIPA AAEDDVKYRG VRRRPWGKYA  120
AEIRDPARKG ARVWLGTYDT SIEAARAYDA AAFKMRGSRA IVNFPLEVGR VRAAAEVAVE  180
SVEEPARKRM RSAVEMVVVK EEEVVAATPL TPSCWAAWES EEVTGIFTVP PLSPFTPLGC  240
SQQRVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28107168566ATERF1
3gcc_A7e-28107168566ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020971513.11e-53ethylene-responsive transcription factor ERF105
RefseqXP_020971514.11e-53ethylene-responsive transcription factor ERF105
RefseqXP_025632953.11e-53ethylene-responsive transcription factor ERF105
SwissprotQ9LW482e-52ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A445AH446e-52A0A445AH44_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-39ERF family protein