PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0140s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 563aa    MW: 63023.9 Da    PI: 4.8804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0140s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.3e-4981333128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +G rF+P+deel++++L++k++gk+ ++ +vi+e+d++k+ePwdLp +  +++++kew+fF+++d+k++ g+r nrat++gyWkatgkd+
  Kalax.0140s0052.1.p   8 VGWRFSPKDEELINYFLRRKINGKEEDV-QVIREIDVCKWEPWDLPsQsVLQSDDKEWFFFCPQDRKSPGGSRLNRATRKGYWKATGKDR 96 
                          79***********************999.99**************96347778999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ s k++++g+kktLvf++grap++++t Wvmheyr+
  Kalax.0140s0052.1.p  97 KIRS-KKNEIGMKKTLVFHTGRAPNSKRTYWVMHEYRA 133
                          ****.8899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.1776156IPR003441NAC domain
SuperFamilySSF1019418.76E-547156IPR003441NAC domain
PfamPF023654.6E-268132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MTLNAAQVGW RFSPKDEELI NYFLRRKING KEEDVQVIRE IDVCKWEPWD LPSQSVLQSD  60
DKEWFFFCPQ DRKSPGGSRL NRATRKGYWK ATGKDRKIRS KKNEIGMKKT LVFHTGRAPN  120
SKRTYWVMHE YRATLKDLDG THPGQKPFVL CRLFKRDDES VLDAADNEVE LASVSPVPNE  180
HSPMDLKPEL VSNQEGLVAA REGEDLENTV KPTPMEVKQD ANYYLDIFKD PDPRDVSLLD  240
SPVVESMGSS LLDHLAASDL YGNESLPLSI NRIEYDDSTD DGLQYINVSH QSPEDQVNNG  300
ISTDDYGTSE VECLDLYGAP GVDRGSFWKQ NSEETEVGQF WSELEQLASS AESNDRSPAF  360
SGTWTSFQQA DNLQTRPEYQ GAAFPGGSVL EHCVFPDKDS ISRSYLGNSE IQIRARPPPQ  420
VEPGVSSFDK HGTARRRIRL QTYPRKRSSY PYEQQQQQAS ESAGDERDRT PMGTMVLQSG  480
NENEGTPIQT VIPQSGRFRQ TSAESDEEVI GKLEAARTST TPRFSTFKLS SLAAPYKLLV  540
GLASVAAMLA AYAGIRGYLR GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-38915620165NO APICAL MERISTEM PROTEIN
1ut4_B1e-38915620165NO APICAL MERISTEM PROTEIN
1ut7_A1e-38915620165NO APICAL MERISTEM PROTEIN
1ut7_B1e-38915620165NO APICAL MERISTEM PROTEIN
4dul_A1e-38915620165NAC domain-containing protein 19
4dul_B1e-38915620165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-77NAC transcription factor-like 9