PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0139s0062.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 407aa    MW: 45583.2 Da    PI: 6.2031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0139s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-52181451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtd+elv +yL++kv gk++++ ++i+e+diyk+ePwdLp  +k+k+++ ewyf+s  dkky +g r nrat++gyWkatg+
  Kalax.0139s0062.1.p  18 LAPGFRFHPTDDELVRYYLARKVCGKHCRI-DAISEADIYKMEPWDLPglSKMKSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 106
                          579***************************.99***************6448888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v++ ++++vg+kktLvf+kgr p g++t+Wvmheyrl
  Kalax.0139s0062.1.p 107 DRSVKH-ESRTVGMKKTLVFHKGRPPGGKRTNWVMHEYRL 145
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-6211168IPR003441NAC domain
PROSITE profilePS5100556.41618168IPR003441NAC domain
PfamPF023651.0E-2620145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTMICRETKP VSPPLPALAP GFRFHPTDDE LVRYYLARKV CGKHCRIDAI SEADIYKMEP  60
WDLPGLSKMK SRDLEWYFYS ALDKKYGNGA RMNRATSKGY WKATGNDRSV KHESRTVGMK  120
KTLVFHKGRP PGGKRTNWVM HEYRLVDEEL ERLGIVKDGY VLCRVFQKSG LGPPNGDQYA  180
SFDESEWDDD KLVPGAETGD EGLMSDEAEP RDGSSLEGNG QDEKNQDTQP EKTEDNLKER  240
SFLGAALVLK NERNDTWSLP SIVRPKRPRY IGSDSSCNPV QNHSSSLPSD PSLSAKLASP  300
MADPADMAAR TLLEFPLLNA HDAKENPQPT PSPSTSSSRF DIASFNMPVH PSYLDLISNL  360
QNEIHSVSAE RENLRIEMMH AQAMIDVLQS RVNVLLQENE GLRRSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-461816915169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619467.11e-135PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A0V0I6Z31e-132A0A0V0I6Z3_SOLCH; Putative NAC domain-containing protein 78-like
TrEMBLM1D2G11e-132M1D2G1_SOLTU; Uncharacterized protein
STRINGXP_009619467.11e-134(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-103NAC domain containing protein 52