PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0139s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 348aa MW: 39130.8 Da PI: 6.4095

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0139s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	5e-51	19	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF+Ptdee+v +yL +k+ ++++++ +i ++d +k+ePwdLpk ++ +e+e y++++rd+ky+tg r+nratk+gyWkatgkdk Kalax.0139s0008.1.p 19 LPRGFRFRPTDEEIVYHYLIPKAMNSNFST-AAIGQADFNKCEPWDLPKIAYMGETERYYYCQRDRKYPTGLRTNRATKAGYWKATGKDK 107 799**********************999.78***********88888999****************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ ++elvg+kktLvfy+grap+gekt+Wvmheyrl Kalax.0139s0008.1.p 108 EIYKGtgnRRELVGMKKTLVFYTGRAPRGEKTNWVMHEYRL 148 987767778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-57	15	173	IPR003441	NAC domain
PROSITE profile	PS51005	52.059	19	172	IPR003441	NAC domain
Pfam	PF02365	3.8E-26	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MANFSKAAGV PTEEDLMGLP RGFRFRPTDE EIVYHYLIPK AMNSNFSTAA IGQADFNKCE 60 PWDLPKIAYM GETERYYYCQ RDRKYPTGLR TNRATKAGYW KATGKDKEIY KGTGNRRELV 120 GMKKTLVFYT GRAPRGEKTN WVMHEYRLQP HFSSSSMIPK NDGWVVSRVF HKNSNSSGGT 180 GSGMQQKTYS DVANDSFSQM QRADSFSTDQ LIREDFESLP PLVDLSALPP PPPPPNTLSQ 240 IIQGLKPAMI SHDSSLKQSQ PEAIRWLPTY ANDDDQLIYS DLPAYYSPFG YEEPKDKNNV 300 VGAAVENEGK PLPQCATSAE ISSHDYEHRN EMTSLGSISD LSILWDF*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MANFSKAAGV PTEEDLMGLP RGFRFRPTDE EIVYHYLIPK AMNSNFSTAA IGQADFNKCE  60
PWDLPKIAYM GETERYYYCQ RDRKYPTGLR TNRATKAGYW KATGKDKEIY KGTGNRRELV  120
GMKKTLVFYT GRAPRGEKTN WVMHEYRLQP HFSSSSMIPK NDGWVVSRVF HKNSNSSGGT  180
GSGMQQKTYS DVANDSFSQM QRADSFSTDQ LIREDFESLP PLVDLSALPP PPPPPNTLSQ  240
IIQGLKPAMI SHDSSLKQSQ PEAIRWLPTY ANDDDQLIYS DLPAYYSPFG YEEPKDKNNV  300
VGAAVENEGK PLPQCATSAE ISSHDYEHRN EMTSLGSISD LSILWDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-46	17	176	18	172	NAC domain-containing protein 19
3swm_B	9e-46	17	176	18	172	NAC domain-containing protein 19
3swm_C	9e-46	17	176	18	172	NAC domain-containing protein 19
3swm_D	9e-46	17	176	18	172	NAC domain-containing protein 19
3swp_A	9e-46	17	176	18	172	NAC domain-containing protein 19
3swp_B	9e-46	17	176	18	172	NAC domain-containing protein 19
3swp_C	9e-46	17	176	18	172	NAC domain-containing protein 19
3swp_D	9e-46	17	176	18	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489720.1	2e-82	NAC domain-containing protein 87
Swissprot	Q9SQQ6	1e-80	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	A0A1S2XI62	6e-81	A0A1S2XI62_CICAR; NAC domain-containing protein 87
STRING	XP_004489720.1	9e-82	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-75	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Kalax.0139s0008.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]