PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0137s0079.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 209aa MW: 23198 Da PI: 5.2851 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29.3 | 1.9e-09 | 101 | 185 | 16 | 99 |
NF-YC 16 fknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ +P+ ri+ i k++ ed ++s ea ll ka e f+ +l ++ ++ + +++ + ++a+v++ + fl d +p++ Kalax.0137s0079.1.p 101 GAKCLFPMNRIRMIAKSEgEDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVNERKNFVAYDHLSASVSKNQRLRFLSDLIPEK 185 456679**********983455569********************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.79E-13 | 100 | 186 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-10 | 106 | 168 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.5E-18 | 106 | 184 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRNTRSTPRK GQKPTTKTKK KGHVSNGDVT EAEVACPAAL SSPDSLPEPP DSDSVGSDNK 60 SIAEEEDEVE EGAEEQEVEV VKKKTVLKQN GKKRKVEEEE GAKCLFPMNR IRMIAKSEGE 120 DDMRLSHEAI FLLNKASEKF LGHLCEEAYG ETVNERKNFV AYDHLSASVS KNQRLRFLSD 180 LIPEKISVEE ALKERQLANC DPRAPTTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2byk_A | 1e-13 | 96 | 190 | 10 | 104 | CHRAC-16 |
2byk_C | 1e-13 | 96 | 190 | 10 | 104 | CHRAC-16 |
2bym_A | 1e-13 | 96 | 190 | 10 | 104 | CHRAC-16 |
2bym_C | 1e-13 | 96 | 190 | 10 | 104 | CHRAC-16 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 93 | KKTVLKQNGKKR |
2 | 86 | 94 | LKQNGKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | cassava4.1_015531m | 6e-29 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-26 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0137s0079.1.p |