PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0137s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 569aa    MW: 64929.6 Da    PI: 6.6915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0137s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1028.2e-3227257128
                  NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s + ++vg+kktLv+y+grap+g++tdWvmheyrl
  Kalax.0137s0047.1.p   2 EWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-QMREVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 72 
                          8*************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.554195IPR003441NAC domain
SuperFamilySSF1019415.75E-37295IPR003441NAC domain
PfamPF023651.9E-15372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEWFFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVTSQ MREVGMKKTL VYYRGRAPHG  60
SRTDWVMHEY RLDERECLSS NGLQDSYALC RIFKKTAIGP KIDDNACSST SSALQGCPGG  120
GQDLQVHHHA TLHHPNQMVH HFDDYYSDNN NLGELAASSS TSNNNFERRF NIDAPTNDAM  180
DNKWMQFLSQ DALDLTASYQ SFPNLPSKNV RMQHRFSMPL LEVEDLTPDD MTTIATTMTH  240
VTLLQGILPV AQVQQEIMGE NNHNQYNNMT KQAWGAGSHS SPLETGSTFN TNHQVQYNND  300
VSTSYFRSCH NNDPSDADMK YIGINGDSEE EQVMRGKMDE NLRWVGMSNK VLETTFLEKH  360
KVIPIENITN FQTRNQSGQL SDYKRLDDTE FNSFALRLTD IDNQDDFRFL DESHIDELSN  420
YSAATEVIEK IEFHQIVPST TVQVELNHVL DNHIYEVTPK LKTDSESTRF TSYPVPVHDN  480
ALKRTGKSII INVFASLLVY YFMSKKSLMH SHIEYPARTD KCRVPISKKG KWMRKIQDYI  540
GAGISNEVAN RIWACVTIVV ALCTLTSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-34210175174NAC domain-containing protein 19
3swm_B5e-34210175174NAC domain-containing protein 19
3swm_C5e-34210175174NAC domain-containing protein 19
3swm_D5e-34210175174NAC domain-containing protein 19
3swp_A5e-34210175174NAC domain-containing protein 19
3swp_B5e-34210175174NAC domain-containing protein 19
3swp_C5e-34210175174NAC domain-containing protein 19
3swp_D5e-34210175174NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.14e-75NAC domain containing protein 28