PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0132.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 624aa    MW: 69085.8 Da    PI: 6.7226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0132.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.5e-2048147198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kalax.0136s0132.5.p  48 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 134
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kalax.0136s0132.5.p 135 RdPGGKLVIGSRK 147
                          4499999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2943148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-2045146IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-2346143No hitNo description
SMARTSM010192.3E-2048148IPR003340B3 DNA binding domain
PROSITE profilePS5086311.46248149IPR003340B3 DNA binding domain
PfamPF023621.7E-1648147IPR003340B3 DNA binding domain
PROSITE profilePS5105013.14304355IPR011124Zinc finger, CW-type
PfamPF074962.9E-7309352IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MVQQPRVARP PAEGRGRNQL LPRYWPRITD QELQQLSGDL NSPVVPLFEK VLSASDAGRI  60
GRLVLPKACA EAYFPPISQS EGTPIRIQDA KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ  120
SMQLQAGDTV IFSRRDPGGK LVIGSRKASI SSDTQDGDIA ALANGAHGES SFSDVSAACG  180
YSGTFQSMAK NRDPHMHALP EQMTVADINL GWSKNNRHRG RIIESPIQKS MVKRPKNISS  240
KSRRLLLHAE DVLELKLTWD EAQDLLRAPP SIKPSIVTVE DYEIEEFEEP PVLAKKTIFT  300
VGASGGQEQW AQCDFCSKWR RLPVDVLLPL KWTCAENFWD SCSRCSCSVP DEVGAKELEN  360
LLKHGKDLKR PRTLENHKLV QDHEPSGLDA LASAAVLGDN AGEAGETSVG ATTKHPRHRP  420
GCTCIVCIQP PSGKGKHHPT CTCNVCMTVK RRFKTLMFRK RIRQSEREAE VSQKEPVLPK  480
ENYELTNLKG DSRHEMLQSH PVEADADRTT QNLVQVDQSS DNSDRQLDLN SHPNRGSKCL  540
EQEMNAAVSM TRLVHAAVLP LESHLKQHGL ANSTLDASGP PQTIEEGDYG VADEDDTVQS  600
GSVIKDEDRS SHANQDQNVD EKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-71261552131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983612.10.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGEOY347050.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]