PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0136s0132.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 879aa MW: 96075.9 Da PI: 6.5991

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0136s0132.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	304	403	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++ Kalax.0136s0132.2.p 304 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 390 99************************556667788***********99899999999.*******************4.. PP S.SEE..EEEEE- CS B3 87 r.sefelvvkvfr 98 r +++lv++ ++ Kalax.0136s0132.2.p 391 RdPGGKLVIGSRK 403 4499999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-29	299	404	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.23E-20	301	401	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.23E-23	302	399	No hit	No description
PROSITE profile	PS50863	11.462	304	405	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-16	304	403	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-20	304	404	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.487	560	610	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.6E-8	565	607	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC 60 DSCKKPIHCG CASSKPFIEF LDFGGACCTT CLKISGQHAD RGDEVSNDHS VQVLSNVGGL 120 QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS 180 SNFLNLNSQS VGSPHFYIAG GNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV 240 VEGRELIKLP SPFQQSQRSR PRVARPPAEG RGRNQLLPRY WPRITDQELQ QLSGDLNSPV 300 VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP IRIQDAKGKE WTFQFRFWPN 360 NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG SRKASISSDT QDGDIAALAN 420 GAHGESSFSD VSAACGYSGT FQSMAKNRDP HMHALPEQMT VADINLGWSK NNRHRGRIIE 480 SPIQKSMVKR PKNISSKSRR LLLHAEDVLE LKLTWDEAQD LLRAPPSIKP SIVTVEDYEI 540 EEFEEPPVLA KKTIFTVGAS GGQEQWAQCD FCSKWRRLPV DVLLPLKWTC AENFWDSCRC 600 SCSVPDEVGA KELENLLKHG KDLKRPRTLE NHKLVQDHEP SGLDALASAA VLGDNAGEAG 660 ETSVGATTKH PRHRPGCTCI VCIQPPSGKG KHHPTCTCNV CMTVKRRFKT LMFRKRIRQS 720 EREAEVSQKE PVLPKENYEL TNLKGDSRHE MLQSHPVEAD ADRTTQNLVQ VDQSSDNSDR 780 QLDLNSHPNR GSKCLEQEMN AAVSMTRLVH AAVLPLESHL KQHGLANSTL DASGPPQTIE 840 EGDYGVADED DTVQSGSVIK DEDRSSHANQ DQNVDEKP*

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC  60
DSCKKPIHCG CASSKPFIEF LDFGGACCTT CLKISGQHAD RGDEVSNDHS VQVLSNVGGL  120
QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS  180
SNFLNLNSQS VGSPHFYIAG GNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV  240
VEGRELIKLP SPFQQSQRSR PRVARPPAEG RGRNQLLPRY WPRITDQELQ QLSGDLNSPV  300
VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP IRIQDAKGKE WTFQFRFWPN  360
NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG SRKASISSDT QDGDIAALAN  420
GAHGESSFSD VSAACGYSGT FQSMAKNRDP HMHALPEQMT VADINLGWSK NNRHRGRIIE  480
SPIQKSMVKR PKNISSKSRR LLLHAEDVLE LKLTWDEAQD LLRAPPSIKP SIVTVEDYEI  540
EEFEEPPVLA KKTIFTVGAS GGQEQWAQCD FCSKWRRLPV DVLLPLKWTC AENFWDSCRC  600
SCSVPDEVGA KELENLLKHG KDLKRPRTLE NHKLVQDHEP SGLDALASAA VLGDNAGEAG  660
ETSVGATTKH PRHRPGCTCI VCIQPPSGKG KHHPTCTCNV CMTVKRRFKT LMFRKRIRQS  720
EREAEVSQKE PVLPKENYEL TNLKGDSRHE MLQSHPVEAD ADRTTQNLVQ VDQSSDNSDR  780
QLDLNSHPNR GSKCLEQEMN AAVSMTRLVH AAVLPLESHL KQHGLANSTL DASGPPQTIE  840
EGDYGVADED DTVQSGSVIK DEDRSSHANQ DQNVDEKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-69	282	411	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017086.2	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Refseq	XP_017983611.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A061GYW3	0.0	A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRING	EOY34705	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	high-level expression of sugar-inducible gene 2

Link Out ? help Back to Top
Phytozome	Kalax.0136s0132.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]