PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0060.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 317aa    MW: 35218.9 Da    PI: 7.9215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-0757101244
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                           +W+ eE + + +a + + ++   +W ++a++++ g+t  +++  +
  Kalax.0136s0060.2.p  57 SKWSHEENKMFENALAVYDKDspdRWQKVAAMIP-GKTVGDVVKQY 101
                          58********************************.***99998776 PP
2Myb_DNA-binding44.63.3e-14173217347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Kalax.0136s0060.2.p 173 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 217
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.08154109IPR017884SANT domain
SMARTSM007171.2E-755107IPR001005SANT/Myb domain
SuperFamilySSF466891.04E-1057111IPR009057Homeodomain-like
PfamPF002494.1E-657101IPR001005SANT/Myb domain
CDDcd001678.67E-758104No hitNo description
PROSITE profilePS5129420.486166222IPR017930Myb domain
SuperFamilySSF466898.97E-17167221IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17169221IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.6E-12170217IPR009057Homeodomain-like
SMARTSM007175.3E-13170220IPR001005SANT/Myb domain
CDDcd001672.00E-11173218No hitNo description
PfamPF002491.2E-12173217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKFEMEAEME IRSSGSNPNL NSYGYPEDHH QQQHSQQQNQ TQRRQHRKQH HQVESSSKWS  60
HEENKMFENA LAVYDKDSPD RWQKVAAMIP GKTVGDVVKQ YEELEADVSS IEAGLVPVPG  120
YTCPAFTLDW AGGSGGGWSQ SGEGFSHGYG GVNGGKRLAS VRGLEQERKK GVPWTEEEHK  180
LFLLGLKKYG KGDWRNISRN FVITRTPTQV ASHAQKYFIR QLSGGKDKRR ASIHDITTVN  240
LNESQTLSPD QLARGQHSPD MPFQWGNQAS TGSGGSMDFN GAYGFNSGRS GMLDSYMGSQ  300
SLGAFQMQSA MHYPQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1655121773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278855.11e-114transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061GWE31e-111A0A061GWE3_THECC; DIV1A protein
STRINGEOY338011e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]