PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0136s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37357.4 Da PI: 7.8493 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 57 | 101 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ eE + + +a + + ++ +W ++a++++ g+t +++ + Kalax.0136s0060.1.p 57 SKWSHEENKMFENALAVYDKDspdRWQKVAAMIP-GKTVGDVVKQY 101 58********************************.***99998776 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 173 | 217 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Kalax.0136s0060.1.p 173 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 217 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.081 | 54 | 109 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-7 | 55 | 107 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.1E-10 | 57 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-6 | 57 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.75E-7 | 58 | 104 | No hit | No description |
PROSITE profile | PS51294 | 20.486 | 166 | 222 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-17 | 167 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-17 | 169 | 221 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.9E-12 | 170 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 170 | 220 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-11 | 173 | 218 | No hit | No description |
Pfam | PF00249 | 1.3E-12 | 173 | 217 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MKFEMEAEME IRSSGSNPNL NSYGYPEDHH QQQHSQQQNQ TQRRQHRKQH HQVESSSKWS 60 HEENKMFENA LAVYDKDSPD RWQKVAAMIP GKTVGDVVKQ YEELEADVSS IEAGLVPVPG 120 YTCPAFTLDW AGGSGGGWSQ SGEGFSHGYG GVNGGKRLAS VRGLEQERKK GVPWTEEEHK 180 LFLLGLKKYG KGDWRNISRN FVITRTPTQV ASHAQKYFIR QLSGGKDKRR ASIHDITTVN 240 LNESQTLSPD QLARGQHSPD MPFQWGNQAS TGSGGSMDFN GAYGFNSGRS GMLDSYMGSQ 300 SLGAFQMQSA MHYPQVCFEH LFYLGKQVLS NSTLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-16 | 55 | 121 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021278855.1 | 1e-114 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-108 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A061GWE3 | 1e-111 | A0A061GWE3_THECC; DIV1A protein | ||||
TrEMBL | A0A2P5CP36 | 1e-111 | A0A2P5CP36_TREOI; GAMYB transcription factor | ||||
STRING | EOY33801 | 1e-112 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-82 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0136s0060.1.p |
Publications ? help Back to Top | |||
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