PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 303aa    MW: 33657.8 Da    PI: 8.859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20152201255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa+a+++a+ kl+g
  Kalax.0136s0021.1.p 152 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAARAYDKAAYKLRG 201
                          59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-34151210No hitNo description
PROSITE profilePS5103223.854152209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-33152210IPR001471AP2/ERF domain
SMARTSM003802.3E-39152215IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23152210IPR016177DNA-binding domain
PfamPF008479.2E-14153201IPR001471AP2/ERF domain
PRINTSPR003672.0E-11153164IPR001471AP2/ERF domain
PRINTSPR003672.0E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAAATECFSS NYSLLSDPVG EELMNALRPF IKSSNCSSPS SSSLSSSPYS SSSSSSSSYA  60
PFHSDPSWKA AQVKSEQILS KAVGSIGLNS LSPTQILQIQ LQLNLGFSNP QQPHQQPLLS  120
DNSQNEAASR LRMLSPKTVH MKLLNAAKAT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG  180
TFDTAEDAAR AYDKAAYKLR GDSARLNFPH MKSSLAIGLD QVRTFPSSVD AKLHAICQNL  240
GKKEPYVTTE REAGSFLFDR SQESCEISFL NFRESKWEEG DENWAKFQLD KLPSVEIDWE  300
SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21151209160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.16e-69PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A218XB978e-64A0A218XB97_PUNGR; Uncharacterized protein
STRINGcassava4.1_023527m1e-63(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-40ERF family protein