PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0135s0064.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 669aa    MW: 71460.6 Da    PI: 6.9308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0135s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16442488455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Kalax.0135s0064.1.p 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 488
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.18E-17434492No hitNo description
SuperFamilySSF474599.68E-21435498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-21435496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-14442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MPLPEFYSLA KGKHRSAQQS AAASPAEPSS LPGSDFVELV WENGQVVMQG QSSRGTKSTD  60
NTASFVDLPP QSSRFRDKGL AKGENSDAGK LLGMMDPVLS DFHMSVPSEL DDHDDMAPWL  120
SYHMDEPVQH NYGSDFFTEL SGVTANNLSN HPTNVSSEPR RSSGVRAMPV SQMNQFPSLH  180
GQCPFPSFRQ KVSNANSNCV NNAAQNLFCG YSAPKRYSSS FGHPSVKVQA QDPVQQLPSS  240
SIMNFSHFSR PAAMVKSSLD SVRVTPELSV AEKLDGKDKG SVLTGVKPAD PSLVASISGQ  300
RVDNAGFKSQ PVVLSAVDGS KLSQSRPVEM SNPADHFGHV GCQDSRTIGA SPKQAVAVAP  360
IGNAAAGNVE KIAEPVVASS VCSGNSVDRA SNDPTYGLKR KYRESEDSEY PSEDAEEESV  420
GIKKAATNRI GSGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  480
IEYLKTLQLQ VQMMSMGSGL CMPPMMLPHA AHLPRFSPMG VGMGMGMEMG YGLGMLDNTP  540
SSPLMQMPSV PGPRFLMAPV PGLGSLNVAP MTNLPMYGFH GQGVPMPMSH APVTSYPAGP  600
PVRPLMDLNT LSAVLPVGNL ASAPTSQPKT PLASTDDHHL PTTSKAVEPS TTKVDVVPVR  660
EATQHNES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659764.11e-150PREDICTED: transcription factor PIF3 isoform X1
STRINGVIT_14s0060g00260.t011e-149(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-65phytochrome interacting factor 3