PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0134s0032.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 478aa    MW: 51688.6 Da    PI: 8.4283
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0134s0032.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17167216155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0134s0032.2.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                          78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-9167216IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16167225IPR016177DNA-binding domain
PROSITE profilePS5103217.846168224IPR001471AP2/ERF domain
CDDcd000189.51E-12168226No hitNo description
Gene3DG3DSA:3.30.730.102.5E-17168224IPR001471AP2/ERF domain
SMARTSM003806.1E-32168230IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-6259303IPR016177DNA-binding domain
CDDcd000187.42E-13259304No hitNo description
SMARTSM003803.1E-12260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MWDLNAEMLT DDAPQAQRNV NHQTAERRAR AGPMMDDAGT STSSIIVNAA AAGDEDSNSS  60
NAARTFTFDI IMNSNTSPHH HQQDNIIASS SSSAAANARV FYSAAPNFGD GGVGSRSSSS  120
ATSPKSDWLN LSFADSAEQS EMRLLQQQQQ QQMPVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGSDAD INFNIADYQE DINQMKSLSK  240
EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKAYDVAAL RCNGSEAATN  300
FEPSTYEGDV ASHPNNDASG HELDLSLTID SSSDYNPKLN ESSSHDGNFK GGGPKLVYPT  360
YATGGGQVPS AHSQPSMPAS YPTMSHGLAV HSGGYLPMSY EVMERSVAAV ASPRMPNWGW  420
QHSQGHGGTI SRLPPFSSAA SSGFSLSSSV TPATSLASLQ LQQPHQSSGY QNNYRKS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463450.11e-114ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK031e-90RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1ZBQ21e-112A0A2K1ZBQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-83related to AP2.7