PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0131s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 632aa MW: 70062.1 Da PI: 6.4429 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.7 | 4.7e-09 | 431 | 468 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LA+++gLt qV +WF N R + Kalax.0131s0060.1.p 431 FEHflHPYPKESEKVMLARQTGLTRGQVANWFINARVR 468 664559******************************88 PP | |||||||
2 | BELL | 123.7 | 7.5e-40 | 295 | 365 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqelq+kk+kL+s+leeVd+r++qy++q+++++ssF+ vag g+akpYt+lAl++iSrhFrcL+dai++qi Kalax.0131s0060.1.p 295 RQELQNKKSKLMSMLEEVDRRFSQYYHQMHVIVSSFDLVAGSGAAKPYTKLALQTISRHFRCLRDAIVGQI 365 79********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.6E-51 | 219 | 363 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-48 | 225 | 362 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.212 | 409 | 472 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-8 | 412 | 476 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-11 | 412 | 473 | No hit | No description |
SuperFamily | SSF46689 | 2.61E-17 | 413 | 479 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 415 | 478 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-16 | 429 | 468 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MAIYYPSSTD QRDASATPFL QEPPSSTSYN ELSIPPGNMM MYINQGAPSS SYMEFMSEHS 60 LSQHDCVDMA TVPGGGNGLM NIPTSGAVSI PSVALQTSSA TGNPYSDSVD EASRKIPGMQ 120 LNMLNGDQNV HTQGLSLSLS TEIQSGMAAS SHYQYSSSGL VSFSHLPMSA EGATPSNYLQ 180 LPAEFSADYG HIFKHEVLYS PQLSMGHKQN QYDSNMYNSF HTKTICDSRF LKAAQQLLDE 240 VVSVQDALKK PEMDKNRTPH QTVGDSSKEG GQKSSENATT GQNEASSNEL SLTVRQELQN 300 KKSKLMSMLE EVDRRFSQYY HQMHVIVSSF DLVAGSGAAK PYTKLALQTI SRHFRCLRDA 360 IVGQIQVTRR SLGEQDTSPN LLGGGIPRLR YVDQQIRQQR GLHQLGVSRH SWRPQRGLPE 420 SSVTILRAWL FEHFLHPYPK ESEKVMLARQ TGLTRGQVAN WFINARVRLW KPMVEEMYKE 480 EFGESETISM SSPDRCLSNA PKSVSSWASI DAADEELQRN LMSLASAGSH PHKFSESTSK 540 PDFTASVEST GPLADFFRNR SHGDDDLGFG LMKFEGDRRH NALDHGLYHS EISSLNQDGS 600 LQLKLRHTLQ FRLTDSLIQG FQSTLDFVEA E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-16 | 418 | 476 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 418 | 476 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 418 | 475 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 418 | 475 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473564.1 | 1e-157 | BEL1-like homeodomain protein 3 | ||||
Refseq | XP_006473565.1 | 1e-157 | BEL1-like homeodomain protein 3 | ||||
Refseq | XP_024952271.1 | 1e-157 | BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A2N9IHG6 | 1e-174 | A0A2N9IHG6_FAGSY; Uncharacterized protein | ||||
STRING | VIT_18s0001g13150.t01 | 1e-157 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-116 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0131s0060.1.p |