PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0130s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 327aa MW: 36115.5 Da PI: 9.5475 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.1 | 1.8e-27 | 42 | 95 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++ +keClkNhAa lGgha+DGCgEfmp+ e + +kC ACgCHRnFHR+ ++ Kalax.0130s0013.1.p 42 EMIFKECLKNHAAGLGGHALDGCGEFMPA--ERVGPGLMKCEACGCHRNFHRQATA 95 689*************************9..4456999**************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.6E-23 | 43 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-9 | 43 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.818 | 45 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-24 | 45 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 191 | 264 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.52E-15 | 192 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-23 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MKPNQMLEIG PGPATNQQLV AQTVSYAYQP MSPPHAAEET TEMIFKECLK NHAAGLGGHA 60 LDGCGEFMPA ERVGPGLMKC EACGCHRNFH RQATAAKSHY REPPRSVVGV TPPHFSFMPR 120 RCSSSPSTST SPHLSQPRQL NPPPQPPPTA ARYLHHHSFG AHMLMPLSTG KSASPPPPST 180 APIKISDHHQ TRRQQNPNPS TRRKRFRSKF SSEQKHRMRR FAEGLNWKIR KHDDMLVDRF 240 CADVGVSRAV LKVWMHNNKH TAGKNVPENP TDSSSGNNGE GEGAGRDEQL QLSNSEHRQQ 300 VDEGDDGLGL GVDLHQRHNH PLNQLD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 204 | 262 | 18 | 76 | ZF-HD homeobox family protein |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 213 | 219 | QKHRMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-25 | homeobox protein 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0130s0013.1.p |