PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0130s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 34770.2 Da PI: 7.5938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.2 | 3.2e-40 | 5 | 119 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+kv++ +l++ + ik +diyk++PwdLp ++d+ky++++r+nr+t g+Wkatg+d+ Kalax.0130s0010.1.p 5 MLPGFRFHPTDEELVGFYLKRKVQHWPLPV-DLIKPLDIYKHDPWDLP--------------SKDRKYRNSTRPNRVTGGGFWKATGTDR 79 579***************************.99**************9..............4799************************ PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ g+ +glkk+Lvfykgra kg+ktdW+mhe+rl Kalax.0130s0010.1.p 80 PIYSSegPGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 119 ****9766778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-49 | 4 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.027 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-21 | 7 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MEDTMLPGFR FHPTDEELVG FYLKRKVQHW PLPVDLIKPL DIYKHDPWDL PSKDRKYRNS 60 TRPNRVTGGG FWKATGTDRP IYSSEGPGKC IGLKKSLVFY KGRAAKGTKT DWMMHEFRLP 120 LADDQPMLPS KSFMDRSIPA NDAWAICRIF KKTSATAVRA ATQGWACCSA FHVAAPEDDA 180 RDSGFISGSI SFAPPKSHPV QTMSFSPNVM IQIDSDPQFN FTSYKPGNAL TQKPPGATNW 240 GAPHHQPPPS SLIHAAPATA RLCDSQGPQS ITRISPASSQ PVISDYDAYF DDQLGIDLSA 300 EDGNSFDLPL NLSDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-41 | 7 | 155 | 22 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313927.1 | 6e-86 | protein FEZ-like | ||||
Refseq | XP_002522427.1 | 6e-86 | protein FEZ | ||||
Refseq | XP_012481219.1 | 6e-86 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 2e-77 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1R3IIP7 | 6e-88 | A0A1R3IIP7_9ROSI; No apical meristem (NAM) protein | ||||
STRING | EOY01940 | 6e-86 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 8e-80 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0130s0010.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|