PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0128s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 223aa MW: 25193.8 Da PI: 4.9323 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 19 | 72 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR++f++eq++ Le +F ++++p +++++LA+ lgL rqV +WFqNrRa+ k Kalax.0128s0036.1.p 19 KRRRFSDEQIKSLEIMFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLK 72 89**************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 116.6 | 1.5e-37 | 19 | 110 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k+rr+s+eq+k+LE +F +e+k ep+ K++la++Lgl+prqva+WFqnrRAR k+kq+E++y+ Lk+++d+l+++ e L+ke+++L++++ Kalax.0128s0036.1.p 19 KRRRFSDEQIKSLEIMFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLKSKQIEREYNILKASFDTLASKYECLKKENQALAAQV 108 89**************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ++ Kalax.0128s0036.1.p 109 QK 110 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-18 | 10 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.653 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 16 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-18 | 19 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-20 | 19 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.77E-14 | 23 | 75 | No hit | No description |
PRINTS | PR00031 | 1.2E-5 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.4E-17 | 74 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MNLEVGGSKQ GGRGGKNGKR RRFSDEQIKS LEIMFGSESK PEPRTKQQLA SDLGLHPRQV 60 AIWFQNRRAR LKSKQIEREY NILKASFDTL ASKYECLKKE NQALAAQVQK LRDQLGKDEG 120 STAGSALPSK QSWRDEEPET DDYLHESKGK PTYILESYDY ETDNKTLVDT SIANPDWLKD 180 EDDIQNLAEP VGSSLTSSEN SWDSSCFLDQ TCSSSLLWEF WS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 66 | 74 | RRARLKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291753.1 | 7e-52 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1R3K6Y4 | 3e-51 | A0A1R3K6Y4_9ROSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-44 | homeobox 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0128s0036.1.p |