PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0127s0061.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 383aa MW: 42571.1 Da PI: 8.544

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0127s0061.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.1	2.5e-08	60	98	5	42
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kst 42 + +C +CGn a+ C ++ C+ CC C hv k t Kalax.0127s0061.1.p 60 KPKCIQCGNVARSRCPYQSCKSCCSKAQNPCYIHVlKQT 98 568*******************************95444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-5	62	102	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MATPSPSQSI NSTDTGVSQP AASVASASAS ASAPPSTAPI SRLHRVDAPA GPKTLRGLNK 60 PKCIQCGNVA RSRCPYQSCK SCCSKAQNPC YIHVLKQTAT VPDKAPSAGS PKVDEQSNEP 120 SPSGPSHRVP SYRQLSSQFS QFNNLNLQQS RKPLTRKEAF AINEWRFAKL KEYRERDIEA 180 ENDAFDRYIQ NIRLLEDVLS AEELYADEPI ESNLEAVAEE SNEVVVSRLK LRLKSNSVKA 240 FNAKDKLRDV VDKGLRQFLK RELNVGDYDI QDFQNQKRRA KSLRDDRARA LNDLLDKMNK 300 ARTMEDLEAC MELKSQLFKQ LPKKHQMELD PGMTSEGKAT YEAIPDQQAS ISIPKLVKTV 360 NIDQETLSSI DLHFASLEHI GL*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MATPSPSQSI NSTDTGVSQP AASVASASAS ASAPPSTAPI SRLHRVDAPA GPKTLRGLNK  60
PKCIQCGNVA RSRCPYQSCK SCCSKAQNPC YIHVLKQTAT VPDKAPSAGS PKVDEQSNEP  120
SPSGPSHRVP SYRQLSSQFS QFNNLNLQQS RKPLTRKEAF AINEWRFAKL KEYRERDIEA  180
ENDAFDRYIQ NIRLLEDVLS AEELYADEPI ESNLEAVAEE SNEVVVSRLK LRLKSNSVKA  240
FNAKDKLRDV VDKGLRQFLK RELNVGDYDI QDFQNQKRRA KSLRDDRARA LNDLLDKMNK  300
ARTMEDLEAC MELKSQLFKQ LPKKHQMELD PGMTSEGKAT YEAIPDQQAS ISIPKLVKTV  360
NIDQETLSSI DLHFASLEHI GL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369678.1	1e-123	PREDICTED: uncharacterized protein LOC103959065
TrEMBL	A0A315A1E8	1e-126	A0A315A1E8_PRUYE; Uncharacterized protein
STRING	XP_009369678.1	1e-122	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	8e-70

Link Out ? help Back to Top
Phytozome	Kalax.0127s0061.1.p