PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0125s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 311aa    MW: 34313.1 Da    PI: 4.6891
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0125s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35251172103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++lisw+e+g+ f+++ + efa+++LpkyFkh+n++SFvRQLn+YgF+kv  ++         weF+++ F+kg+k
  Kalax.0125s0045.1.p  25 FLTKTYQLVDDPAVDDLISWNEDGSGFIIWRPAEFARDLLPKYFKHNNLSSFVRQLNTYGFRKVVPDR---------WEFANDCFRKGEK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll++i+r+k +
  Kalax.0125s0045.1.p 106 GLLRDIQRRKMS 117
                          *********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.1E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.8E-3722114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.4E-4170195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGMPAEQTG ESLAGEMQRA LPTPFLTKTY QLVDDPAVDD LISWNEDGSG FIIWRPAEFA  60
RDLLPKYFKH NNLSSFVRQL NTYGFRKVVP DRWEFANDCF RKGEKGLLRD IQRRKMSQLV  120
ATSPAVTLPP STVQLVQISP SNSGEEQMFS STSSPGGAVL RQVINSTTPE LVEENERLKK  180
ENEQMTNELS HLRGLCNNIF VLMSNYGPSG QQDAGNPSME SKQLDLLQSG RFSEEQGGSS  240
GGGAGALDDK EVEEDTSPKL FGVSIGAKRM RRCEETESSE RHQQQRADSQ TENNNAQSDM  300
KLEPSQSGPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-262511720123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476067.11e-119PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_012476068.11e-119PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D32e-91HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2R1D01e-117A0A0D2R1D0_GOSRA; Uncharacterized protein
STRINGGorai.004G208800.11e-118(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-93HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]