PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0125s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 299aa    MW: 34061.4 Da    PI: 9.7364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0125s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-16108153147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v ++G+ +W++ a++++ gR++k+c++rw++ 
  Kalax.0125s0030.1.p 108 RGHWRPAEDAKLKKLVDKFGSQNWNLMAEHFP-GRSGKSCRLRWFNQ 153
                          899*****************************.***********996 PP
2Myb_DNA-binding51.32.8e-16160203146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++++ eE+e+l++ ++++G++ W+ I+++++ gRt++ +k++w+ 
  Kalax.0125s0030.1.p 160 KKPFSDEEEEKLLKSHTLYGNK-WAMISKMFP-GRTDNAVKNHWHV 203
                          689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.111103154IPR017930Myb domain
SMARTSM007172.0E-13107156IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-28107201IPR009057Homeodomain-like
PfamPF002491.1E-15108153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-27109161IPR009057Homeodomain-like
CDDcd001672.76E-11111152No hitNo description
PROSITE profilePS5129424.381155209IPR017930Myb domain
SMARTSM007172.2E-14159207IPR001005SANT/Myb domain
PfamPF002494.9E-13160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20162208IPR009057Homeodomain-like
CDDcd001675.96E-10162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKSQDLKNNA ANGYHSFPRL APPPPPPLSL FGDIERREWM GLNMRKSSSA FDLNQTSVRD  60
EEQNNFKSDE RKDQAVEIKQ VVDRHCHDVE VANNDDRNEN IQKICRSRGH WRPAEDAKLK  120
KLVDKFGSQN WNLMAEHFPG RSGKSCRLRW FNQLDPKINK KPFSDEEEEK LLKSHTLYGN  180
KWAMISKMFP GRTDNAVKNH WHVIMARKQR EQNNNKCVYK KLKPNPISAA SNQTAAVASK  240
EASPCLFAKS PMGSNEGSTH NIIDLNKQLS NFSGKSDADS ERTDLDSITC IKLNKLEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-311082087107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-59myb domain protein 105