PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0124s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 328aa    MW: 36997.4 Da    PI: 7.7858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0124s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05136155120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k F+r  n++ H+
  Kalax.0124s0047.1.p 136 FVCSVCNKIFNRYNNMQMHM 155
                          89*****************9 PP
2zf-C2H214.88.5e-05221243123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  k + ++H +++
  Kalax.0124s0047.1.p 221 FACRKCGKAFAVKGDWRTHEKNC 243
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-5136155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577136163IPR007087Zinc finger, C2H2
SuperFamilySSF576674.06E-8136158No hitNo description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SMARTSM00355190184216IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-6208241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.06E-8216241No hitNo description
PROSITE profilePS501578.85221241IPR007087Zinc finger, C2H2
SMARTSM0035554221241IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQTHTFSNTT TTLSSFKTVT GCFGAGTESE DDEYHHSTLL TLGLPGQQYL PKSSTLKHHL  60
PLKPRTDDQT AQEDSKGSTT NNVTVALHIG QPAATIYDDM GTLVRADLRD MLDGQESGLQ  120
YWIPSPAQIL VGPAQFVCSV CNKIFNRYNN MQMHMWGHGS QFRKGPESLR GTKQASSFLR  180
LPCYCCSEGC RNHIDHPRAK PLKDFRTLQT HYKRKHGVKP FACRKCGKAF AVKGDWRTHE  240
KNCGKLWFCI CGSDFKHKRS LKDHIRAFGD GHGPHNDKLY SNSNENRGHN HNNDDLFEED  300
EEDEDEEDEV VHGFHKKHAH GKMAVMI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.11e-119zinc finger protein WIP6
RefseqXP_021649629.11e-119zinc finger protein WIP6-like
SwissprotQ9FX681e-110ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A067KC111e-117A0A067KC11_JATCU; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein