PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0124s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 354aa    MW: 38955.7 Da    PI: 10.0455
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0124s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-1275123155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a+++++g
  Kalax.0124s0045.1.p  75 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARVYDIAAQRFRG 123
                          689***9788.8*********3.....5**********99*************98 PP
2B31001.4e-31197299196
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+ tpsdv+k++rlv+pk++ae+h           + +++ l +ed  gr+W+++++y+++s++yvlt+GW++Fvk+++L++gD+v F
  Kalax.0124s0045.1.p 197 FEKAITPSDVGKLNRLVIPKQHAEKHfplqsgspA--SSKGILLNFEDAGGRVWRFRYSYWNSSQSYVLTRGWSRFVKEKNLRAGDVVSF 284
                          89***************************976322..3478899********************************************** PP

                          EE-SS.SEE..EEEE CS
                   B3  83 kldgr.sefelvvkv 96 
                          + +   ++++l++ +
  Kalax.0124s0045.1.p 285 YKSTGaTDRQLHIDF 299
                          *66444777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-2375130No hitNo description
PfamPF008471.0E-675123IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1675131IPR016177DNA-binding domain
SMARTSM003801.6E-2876137IPR001471AP2/ERF domain
PROSITE profilePS5103219.45476131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1876131IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-38192301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-30196296IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-29196297No hitNo description
PfamPF023625.1E-28197301IPR003340B3 DNA binding domain
PROSITE profilePS5086314.593197301IPR003340B3 DNA binding domain
SMARTSM010192.2E-24197303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDLNCSDDMT STATKDASSS SASSSSSLII APAPPLTLAA LRVNPLCRMG SGASVVIDTD  60
NGVEAESSGR KLVSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARVYDIAAQR  120
FRGRDAVTNF KPLKTDEACS AEYSFLTSRS KSEIVDMLRK HTYAEELEQS KRHSGSDTNK  180
PDPRSSSGSG PAREQLFEKA ITPSDVGKLN RLVIPKQHAE KHFPLQSGSP ASSKGILLNF  240
EDAGGRVWRF RYSYWNSSQS YVLTRGWSRF VKEKNLRAGD VVSFYKSTGA TDRQLHIDFK  300
SRVGVIASAS KPSPITPLDN IVRLFGVNIG KSSNERPREI ELLGFESCKR RRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5619431311128DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022776993.11e-149AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-134RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A061EB301e-146A0A061EB30_THECC; AP2 domain class transcription factor
STRINGEOY021361e-147(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-133related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]