PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0124s0038.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 201aa MW: 22589.8 Da PI: 8.9637 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.5 | 8.6e-67 | 10 | 168 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q + + ++l+++ ++l + + +++ + + ++s+ t+ Kalax.0124s0038.3.p 10 CPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSVLSWQDLHQH---HQLPNYLNGGQDNRIDHLGSSSKITN 96 68******************************************99998877777665433...34444444444444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ v+rPPek+qrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Kalax.0124s0038.3.p 97 KMT--MRVPVQKSIE-ERAVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 168 444..3334444444.3579*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-70 | 11 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 109 | 161 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 115 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGSSCVEVVC PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCSNLW SVNMAAAFQS 60 VLSWQDLHQH HQLPNYLNGG QDNRIDHLGS SSKITNKMTM RVPVQKSIEE RAVNRPPEKK 120 QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ETNNNNQPTR 180 FDQNNAGKRL MSKAAGLMKK * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450896.1 | 1e-97 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006475869.1 | 1e-97 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 3e-79 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GY39 | 2e-96 | A0A067GY39_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UP20 | 2e-96 | V4UP20_9ROSI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-94 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-81 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0124s0038.3.p |
Publications ? help Back to Top | |||
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