PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0124s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 229aa    MW: 25903.2 Da    PI: 6.5067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0124s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-16550348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +WT+eEd ll+++++q G g W++++   g++R++k+c++rw++yl
  Kalax.0124s0013.1.p  5 AWTEEEDHLLKKCIEQNGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                         7*******************************************97 PP
2Myb_DNA-binding41.62.8e-1356100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +  +E + +++++  lG++ W++Ia++++ gRt++++k++w+ +
  Kalax.0124s0013.1.p  56 RGTFADDEVLFIIKLHSNLGNR-WSLIASRLP-GRTANDVKNYWNCH 100
                          67888999999***********.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.825154IPR017930Myb domain
SMARTSM007175.5E-12252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-18557IPR009057Homeodomain-like
SuperFamilySSF466892.97E-25597IPR009057Homeodomain-like
PfamPF002495.6E-15550IPR001005SANT/Myb domain
CDDcd001677.76E-10550No hitNo description
PROSITE profilePS5129417.95955105IPR017930Myb domain
SMARTSM007171.8E-1255103IPR001005SANT/Myb domain
PfamPF002497.4E-125698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2258105IPR009057Homeodomain-like
CDDcd001677.75E-961101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIEQ NGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIRRGTFA  60
DDEVLFIIKL HSNLGNRWSL IASRLPGRTA NDVKNYWNCH LSKKLSKAHN NHETMSPVTT  120
ANKGGHFTAY QYQTLTSISA TSLIGPHDYQ PSSMHLEDTY GLELELVGSN GMYITCGRDE  180
ADGQNEVIKF ASELEFEGTK MTAGREISSM DNHIGDWDEV IFDMDLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-2051174115MYB3
3zqc_D2e-2051174115MYB3
3zqc_G2e-2051174115MYB3
3zqc_J2e-2051174115MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027133.19e-69PREDICTED: transcription factor MYB113
SwissprotQ9FNV96e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061F2612e-67A0A061F261_THECC; Myb domain protein 113, putative
STRINGEOY107523e-68(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]