PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0124s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 276aa MW: 30464.3 Da PI: 7.2763

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0124s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Kalax.0124s0003.1.p 158 SHSLAERARREKISERMKILQDLVPGC----NKLIGKALVLDEIINYVQSLQ 205 8***********************9....666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.02E-8	152	209	No hit	No description
SuperFamily	SSF47459	6.41E-17	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-17	154	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-7	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MELPLVNESS FTPANPASYS LEDFWPLGAG IGDHTRVLGL RLANSERRIG LGNRDGSAEE 60 STVTDQRISR NGGGGRKRRL ADESSKVADA SGAEQLKTSS TKRVKILEPK EEKRSMKDEV 120 DGASVTGAKH AEQNTNVSEP PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKLIGK ALVLDEIINY VQSLQHQVEF LSMKLEAINS SITPKDKMLH GKDLEVLGFD 240 STGMMFGTQP TSEYAQEPQP EWLHMHLGKT CERTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882712.1	1e-109	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	6e-70	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2I4FIZ4	1e-103	A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRING	XP_002511487.1	1e-102	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0124s0003.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]