PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0122s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 681aa    MW: 74709.8 Da    PI: 6.9264
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0122s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094755121954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Kalax.0122s0009.1.p 475 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 512
                          554459******************************88 PP
2BELL114.36.2e-37335406172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          er e+q+kk+kLl +l+eV +rY++y+eq+q+v++s++ v+g+gsa pYt+lA+ka+SrhFrcLkda+a q+
  Kalax.0122s0009.1.p 335 ERVEHQRKKVKLLAMLDEVVRRYNHYCEQIQMVVNSYDLVMGYGSAVPYTALAQKAMSRHFRCLKDAVAAQL 406
                          688******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-66254404IPR006563POX domain
PfamPF075263.9E-47260403IPR006563POX domain
PROSITE profilePS5007112.325453516IPR001356Homeobox domain
CDDcd000865.78E-12456517No hitNo description
SMARTSM003898.1E-9456520IPR001356Homeobox domain
SuperFamilySSF466898.55E-17458523IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28459522IPR009057Homeodomain-like
PfamPF059203.4E-18473512IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MSQDYHQQEN IYSFSNGFGR SEQQQILREK LAGGGGFSAP DENSGAGIST IYETAGMLSE  60
MFSYPAGVSS ATQLLHQMGP PGFNDSRQPQ PPPGIQEWYA DRKDPNILEF RDVSTAQSIQ  120
QQQRQQQPQM SAMNAADSAA AAMQLFLMNP QSRPSTSPGA ASAPPQSNTL HMLLPNHPNS  180
GRFGTWGGGG GVAGEVQGLS LSLASSLEAA KADQFFFTQH HQQLQQQQHT LHFNHQINNN  240
NGLFVGPSSS SSPLATMNLL RNSKYSKPTQ ELLEEFCSVG RGHFKKTKLR NNNNLNPNNP  300
DQTAAAAIDG NGGGGASSSS TKEGSTAPPV LTAAERVEHQ RKKVKLLAML DEVVRRYNHY  360
CEQIQMVVNS YDLVMGYGSA VPYTALAQKA MSRHFRCLKD AVAAQLKHSC ELLGEKDAAA  420
GGGVTKGETP RLRILDQSLR QQRAFHQMGM MENEAWRPQR GLPERSANIL RAWLFEHFLH  480
PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQEAKEEE ASEIPENNYE  540
NSNENTNNQE DLQNDPPITH HYNSTSELNH HTGVSSRFSG MPQQAPNMVM SAAGPPPQGY  600
YHQRFHVEMM GADDPHLRNY NGGSSSTPSG GYISGEPAGL IRFGTTTTTV GDVSLTLGLR  660
QHSGNLPEKN SFSVRDFGGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16462520563Homeobox protein Meis2
3k2a_B2e-16462520563Homeobox protein Meis2
4xrm_A2e-16462520563Homeobox protein Meis2
4xrm_B2e-16462520563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024181309.10.0BEL1-like homeodomain protein 2
RefseqXP_024181310.10.0BEL1-like homeodomain protein 2
RefseqXP_024181311.10.0BEL1-like homeodomain protein 2
TrEMBLA0A2P6RMT60.0A0A2P6RMT6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGGorai.007G207200.10.0(Gossypium raimondii)
STRINGXP_007156875.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-129BEL1-like homeodomain 4