PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0122s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 630aa    MW: 69886.8 Da    PI: 6.0685
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0122s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.82e-3072156187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++lk+plW++vs+km e g++rs+k+Ckek+en+ k++k++keg++++   + +t+++fdqlea
  Kalax.0122s0006.1.p  72 RWPRQETLALLKIRSDMDVAFRDSNLKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKEGRSSK--SDGKTYRFFDQLEA 156
                          8********************************************************************97..45567*******85 PP
2trihelix92.54.2e-29432516186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +L+++r++ e +++++  k+p Wee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpy++ l+
  Kalax.0122s0006.1.p 432 RWPKAEVETLVKLRTSFEIKYQENGPKGPFWEEISAGMRSLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYYHLLD 516
                          8********************************************************************98.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.91165129IPR017877Myb-like domain
SMARTSM007171.6E-469131IPR001005SANT/Myb domain
CDDcd122031.44E-2471136No hitNo description
PfamPF138378.7E-2071157No hitNo description
PROSITE profilePS500907.213425489IPR017877Myb-like domain
SMARTSM007170.0038429491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-4430488IPR009057Homeodomain-like
CDDcd122032.22E-25431496No hitNo description
PfamPF138372.8E-20431517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MMLGGGGGGD GASMPVSAAG GGGDNTASNN NNSSVGGVVF GEDQETHNST SGNNNMMMMM  60
EDGDRNNSGG NRWPRQETLA LLKIRSDMDV AFRDSNLKGP LWDDVSRKMG ELGYHRSAKK  120
CKEKFENVYK YHKRTKEGRS SKSDGKTYRF FDQLEALDQL QPFQMPPPPV QQPPQVSHSK  180
APPFLMQPPP ALQTPTTISF SQHQPCTNNI TNSNPITTTA PITPVPTNPT IISPNYQSGA  240
TNFMVSTSSS TSSDDLQQRR RTGKKRKWRD FFEKLMRDVV DKQEELQNKF LRSIEMRERE  300
RSMREEAWRM EEMARLNREH EVLVQERAAA AAKDAAVIAF LQKIAGQQPQ TQPQPQPQPL  360
LQPLPPQPKQ QPPPPPHTIQ LNPSTTPPPP QRQPPPQQPQ PLNVMKPDSN AAGAQNNLAI  420
VCGSTQPASS SRWPKAEVET LVKLRTSFEI KYQENGPKGP FWEEISAGMR SLGYNRNAKR  480
CKEKWENINK YFKKVKESNK QRPEDSKTCP YYHLLDTIYK EKKGGGGGGD NINSYLPPHS  540
SNSLMAPPLM VQPEQQWPLA PQAQARHQNE QGEDQDDMLD EDELDEDMED EEEEGDEEDN  600
NGGTYEVVAT ASNGAPPAAT GSLGTTAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257266QRRRTGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-167trihelix transcription factor GT-2-like
TrEMBLA0A3Q7JB431e-167A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-166(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-61Trihelix family protein