PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0119s0070.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24520.2 Da    PI: 8.4569
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0119s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72e-25959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         kri n +nr vtfskRr gi KKA+E+ vLCda+v++i+f+s+gk++ey+s
  Kalax.0119s0070.1.p  9 KRIANATNRMVTFSKRRCGITKKAKEITVLCDAKVSLIVFASNGKMHEYCS 59
                         79***********************************************96 PP
2K-box72.89.7e-2571167197
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yq++sgk+l+eak+e+l++e++++kke++n+q e+Rhl Ged++ L++ +L+++e+ Le +l+++R+k +++++++ +++++ e+e++e 
  Kalax.0119s0070.1.p  71 YQNQSGKRLWEAKHENLSNEIDRIKKENDNMQIELRHLRGEDIGALDIPQLMEMEDMLEMGLTNVREKMMDIYKMKKRNTRMLEEETSEL 160
                          899*************************************************************************************99 PP

                K-box  91 nkaLrkk 97 
                            + +++
  Kalax.0119s0070.1.p 161 SYSVHQQ 167
                          9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.913161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-34160IPR002100Transcription factor, MADS-box
CDDcd002652.19E-35280No hitNo description
SuperFamilySSF554552.88E-33296IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1582163IPR002487Transcription factor, K-box
PROSITE profilePS5129712.87584170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IANATNRMVT FSKRRCGITK KAKEITVLCD AKVSLIVFAS NGKMHEYCSH  60
NSSLSDILDI YQNQSGKRLW EAKHENLSNE IDRIKKENDN MQIELRHLRG EDIGALDIPQ  120
LMEMEDMLEM GLTNVREKMM DIYKMKKRNT RMLEEETSEL SYSVHQQEIS MGVKGRDVVD  180
DEYSGRLRGY NAPMPFSFRV QPIQPNLQDR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15159159MEF2 CHIMERA
6byy_B5e-15159159MEF2 CHIMERA
6byy_C5e-15159159MEF2 CHIMERA
6byy_D5e-15159159MEF2 CHIMERA
6bz1_A6e-15159159MEF2 CHIMERA
6bz1_B6e-15159159MEF2 CHIMERA
6bz1_C6e-15159159MEF2 CHIMERA
6bz1_D6e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601944.18e-98floral homeotic protein PMADS 2-like
SwissprotQ0HA253e-97MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2N9ITG71e-96A0A2N9ITG7_FAGSY; Uncharacterized protein
STRINGcassava4.1_022750m3e-97(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]